halapi
hierarchichalalignmentformatapi
hal::HDF5BottomSegment Member List
This is the complete list of members for hal::HDF5BottomSegment, including all inherited members.
_array (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [mutable, protected]
_genome (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [mutable, protected]
_index (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [mutable, protected]
dataType(hal_size_t numChildren) (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [static]
firstChildOffset (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [protected, static]
genomeIndexOffset (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [protected, static]
getArrayIndex() const hal::HDF5BottomSegment [inline, virtual]
getChildIndex(hal_size_t i) const hal::HDF5BottomSegment [inline, virtual]
getChildReversed(hal_size_t i) const hal::HDF5BottomSegment [inline, virtual]
getGenome() const hal::HDF5BottomSegment [inline, virtual]
getGenome()hal::HDF5BottomSegment [inline, virtual]
getLength() const hal::HDF5BottomSegment [inline, virtual]
getNextParalogyIndex() const hal::HDF5BottomSegment [inline, virtual]
getNumChildren() const hal::HDF5BottomSegment [inline, virtual]
getStartPosition() const hal::HDF5BottomSegment [inline, virtual]
getTopParseIndex() const hal::HDF5BottomSegment [inline, virtual]
getTopParseOffset() const hal::HDF5BottomSegment [inline, virtual]
HDF5BottomSegment(HDF5Genome *genome, HDF5ExternalArray *array, hal_index_t index)hal::HDF5BottomSegment
HDF5BottomSegmentIterator (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [friend]
HDF5TopSegmentIterator (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [friend]
lengthOffset (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [protected, static]
numChildrenFromDataType(const H5::DataType &dataType) (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [static]
parIndexOffset (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [protected, static]
setChildIndex(hal_size_t i, hal_index_t childIndex)hal::HDF5BottomSegment [inline, virtual]
setChildReversed(hal_size_t child, hal_bool_t isReversed)hal::HDF5BottomSegment [inline, virtual]
setLength(hal_size_t length)hal::HDF5BottomSegment [inline, virtual]
setNextParalogyIndex(hal_index_t parIdx)hal::HDF5BottomSegment [inline, virtual]
setStartPosition(hal_index_t startPos)hal::HDF5BottomSegment [inline, virtual]
setTopParseIndex(hal_index_t parseIndex)hal::HDF5BottomSegment [inline, virtual]
setTopParseOffset(hal_offset_t parseOffset)hal::HDF5BottomSegment [inline, virtual]
topIndexOffset (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [protected, static]
topOffsetOffset (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [protected, static]
totalSize(hal_size_t numChildren) (defined in hal::HDF5BottomSegment)hal::HDF5BottomSegment [protected, static]
~BottomSegment()=0hal::BottomSegment [inline, protected, pure virtual]
~HDF5BottomSegment()hal::HDF5BottomSegment
~Segment()=0hal::Segment [inline, protected, pure virtual]
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