halapi
hierarchichalalignmentformatapi
Public Member Functions | Protected Attributes | Friends
hal::HDF5BottomSegmentIterator Class Reference
Inheritance diagram for hal::HDF5BottomSegmentIterator:
hal::BottomSegmentIterator hal::SegmentIterator

List of all members.

Public Member Functions

 HDF5BottomSegmentIterator (HDF5Genome *genome, hal_index_t index, hal_size_t startOffset=0, hal_size_t endOffset=0, hal_bool_t inverted=false)
void toLeft () const
void toRight () const
void toReverse () const
void toNextParalogy () const
hal_offset_t getStartOffset () const
hal_offset_t getEndOffset () const
hal_size_t getLength () const
hal_bool_t getReversed () const
void getString (std::string &outString) const
BottomSegmentIteratorPtr copy ()
BottomSegmentIteratorConstPtr copy () const
void toParent (TopSegmentIteratorConstPtr ts) const
void toParseDown (TopSegmentIteratorConstPtr ts) const
BottomSegmentgetBottomSegment ()
const BottomSegmentgetBottomSegment () const
bool inRange () const

Protected Attributes

HDF5BottomSegment _bottomSegment
hal_offset_t _startOffset
hal_offset_t _endOffset
hal_bool_t _reversed

Friends

class HDF5TopSegmentIterator

The documentation for this class was generated from the following files:
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