halapi
hierarchichalalignmentformatapi
hal::HDF5TopSegmentIterator Member List
This is the complete list of members for hal::HDF5TopSegmentIterator, including all inherited members.
_endOffset (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [mutable, protected]
_reversed (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [mutable, protected]
_startOffset (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [mutable, protected]
_topSegment (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [protected]
copy() (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
copy() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
counted_ptr< const SegmentIterator > (defined in hal::SegmentIterator)hal::SegmentIterator [friend]
counted_ptr< const TopSegmentIterator > (defined in hal::TopSegmentIterator)hal::TopSegmentIterator [friend]
counted_ptr< SegmentIterator > (defined in hal::SegmentIterator)hal::SegmentIterator [friend]
counted_ptr< TopSegmentIterator > (defined in hal::TopSegmentIterator)hal::TopSegmentIterator [friend]
getEndOffset() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
getLength() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
getReversed() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
getStartOffset() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
getString(std::string &outString) const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
getTopSegment() (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
getTopSegment() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
HDF5BottomSegmentIterator (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [friend]
HDF5TopSegmentIterator(HDF5Genome *genome, hal_index_t index, hal_offset_t startOffset=0, hal_offset_t endOffset=0, hal_bool_t inverted=false) (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator
inRange() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [inline]
toChild(BottomSegmentIteratorConstPtr bs, hal_size_t child) const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
toLeft() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
toNextParalogy() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
toParseUp(BottomSegmentIteratorConstPtr bs) const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
toReverse() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
toRight() const (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator [virtual]
~HDF5TopSegmentIterator() (defined in hal::HDF5TopSegmentIterator)hal::HDF5TopSegmentIterator
~SegmentIterator()=0 (defined in hal::SegmentIterator)hal::SegmentIterator [inline, protected, pure virtual]
~TopSegmentIterator()=0 (defined in hal::TopSegmentIterator)hal::TopSegmentIterator [inline, protected, pure virtual]
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