halapi
hierarchichalalignmentformatapi
hal::StaticBottomSegment< NumChildren > Member List
This is the complete list of members for hal::StaticBottomSegment< NumChildren >, including all inherited members.
_childSegIndex (defined in hal::StaticBottomSegment< NumChildren >)hal::StaticBottomSegment< NumChildren > [protected]
_length (defined in hal::GenomeSegment< genidx_t, segidx_t >)hal::GenomeSegment< genidx_t, segidx_t > [protected]
_parseIdx (defined in hal::GenomeSegment< genidx_t, segidx_t >)hal::GenomeSegment< genidx_t, segidx_t > [protected]
_parseOffset (defined in hal::GenomeSegment< genidx_t, segidx_t >)hal::GenomeSegment< genidx_t, segidx_t > [protected]
_repeatIndex (defined in hal::BottomSegment)hal::BottomSegment [protected]
_reverseComplement (defined in hal::StaticBottomSegment< NumChildren >)hal::StaticBottomSegment< NumChildren > [protected]
_start (defined in hal::GenomeSegment< genidx_t, segidx_t >)hal::GenomeSegment< genidx_t, segidx_t > [protected]
getChildIndex(int i) const hal::StaticBottomSegment< NumChildren > [virtual]
getLength() const hal::GenomeSegment< genidx_t, segidx_t >
getNumChildren() const hal::StaticBottomSegment< NumChildren > [virtual]
getParseIdx() const hal::GenomeSegment< genidx_t, segidx_t >
getParseOffset() const hal::GenomeSegment< genidx_t, segidx_t >
getRepeatIndex() const hal::BottomSegment
getReverseComp(int i) const hal::StaticBottomSegment< NumChildren > [virtual]
getStart() const hal::GenomeSegment< genidx_t, segidx_t >
NullIndexhal::GenomeSegment< genidx_t, segidx_t > [static]
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