halapi
hierarchichalalignmentformatapi
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_endOffset (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [mutable, protected] |
_reversed (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [mutable, protected] |
_startOffset (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [mutable, protected] |
_topSegment (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [protected] |
copy() (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
copy() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
counted_ptr< const SegmentIterator > (defined in hal::SegmentIterator) | hal::SegmentIterator | [friend] |
counted_ptr< const TopSegmentIterator > (defined in hal::TopSegmentIterator) | hal::TopSegmentIterator | [friend] |
counted_ptr< SegmentIterator > (defined in hal::SegmentIterator) | hal::SegmentIterator | [friend] |
counted_ptr< TopSegmentIterator > (defined in hal::TopSegmentIterator) | hal::TopSegmentIterator | [friend] |
getEndOffset() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
getLength() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
getReversed() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
getStartOffset() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
getString(std::string &outString) const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
getTopSegment() (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
getTopSegment() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
HDF5BottomSegmentIterator (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [friend] |
HDF5TopSegmentIterator(HDF5Genome *genome, hal_index_t index, hal_offset_t startOffset=0, hal_offset_t endOffset=0, hal_bool_t inverted=false) (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | |
inRange() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [inline] |
toChild(BottomSegmentIteratorConstPtr bs, hal_size_t child) const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
toLeft() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
toNextParalogy() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
toParseUp(BottomSegmentIteratorConstPtr bs) const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
toReverse() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
toRight() const (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | [virtual] |
~HDF5TopSegmentIterator() (defined in hal::HDF5TopSegmentIterator) | hal::HDF5TopSegmentIterator | |
~SegmentIterator()=0 (defined in hal::SegmentIterator) | hal::SegmentIterator | [inline, protected, pure virtual] |
~TopSegmentIterator()=0 (defined in hal::TopSegmentIterator) | hal::TopSegmentIterator | [inline, protected, pure virtual] |