halapi
hierarchichalalignmentformatapi
hal::HDF5TopSegment Member List
This is the complete list of members for hal::HDF5TopSegment, including all inherited members.
_array (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [mutable, protected]
_genome (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [mutable, protected]
_index (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [mutable, protected]
bottomIndexOffset (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [protected, static]
bottomOffsetOffset (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [protected, static]
dataType() (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [static]
genomeIndexOffset (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [protected, static]
getArrayIndex() const hal::HDF5TopSegment [inline, virtual]
getBottomParseIndex() const hal::HDF5TopSegment [inline, virtual]
getBottomParseOffset() const hal::HDF5TopSegment [inline, virtual]
getGenome() const hal::HDF5TopSegment [inline, virtual]
getGenome()hal::HDF5TopSegment [inline, virtual]
getLength() const hal::HDF5TopSegment [inline, virtual]
getNextParalogyIndex() const hal::HDF5TopSegment [inline, virtual]
getParentIndex() const hal::HDF5TopSegment [inline, virtual]
getParentReversed() const hal::HDF5TopSegment [inline, virtual]
getStartPosition() const hal::HDF5TopSegment [inline, virtual]
HDF5BottomSegmentIterator (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [friend]
HDF5TopSegment(HDF5Genome *genome, HDF5ExternalArray *array, hal_index_t index)hal::HDF5TopSegment
HDF5TopSegmentIterator (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [friend]
lengthOffset (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [protected, static]
parentIndexOffset (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [protected, static]
parentReversedOffset (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [protected, static]
parIndexOffset (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [protected, static]
setBottomParseIndex(hal_index_t botParseIdx)hal::HDF5TopSegment [inline, virtual]
setBottomParseOffset(hal_offset_t botParseOffset)hal::HDF5TopSegment [inline, virtual]
setLength(hal_size_t length)hal::HDF5TopSegment [inline, virtual]
setNextParalogyIndex(hal_index_t parIdx)hal::HDF5TopSegment [inline, virtual]
setParentIndex(hal_index_t parIdx)hal::HDF5TopSegment [inline, virtual]
setParentReversed(hal_bool_t isReversed)hal::HDF5TopSegment [inline, virtual]
setStartPosition(hal_index_t startPos)hal::HDF5TopSegment [inline, virtual]
totalSize (defined in hal::HDF5TopSegment)hal::HDF5TopSegment [protected, static]
~HDF5TopSegment()hal::HDF5TopSegment
~Segment()=0hal::Segment [inline, protected, pure virtual]
~TopSegment()=0hal::TopSegment [inline, protected, pure virtual]
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