halapi
hierarchichalalignmentformatapi
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Here is a list of all documented files with brief descriptions:
[detail level
1
2
]
inc
hal.h
halAlignment.h
halAlignmentInstance.h
halBottomSegment.h
halBottomSegmentIterator.h
halCLParser.h
halCLParserInstance.h
halColumnIterator.h
halCommon.h
halDefs.h
halDNAIterator.h
halGappedBottomSegmentIterator.h
halGappedSegmentIterator.h
halGappedTopSegmentIterator.h
halGenome.h
halMappedSegment.h
halMetaData.h
halPositionCache.h
halRearrangement.h
halSegment.h
halSegmentedSequence.h
halSegmentIterator.h
halSequence.h
halSequenceIterator.h
halSlicedSegment.h
halTopSegment.h
halTopSegmentIterator.h
halValidate.h
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