halapi
hierarchichalalignmentformatapi
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#include <dynBottomSegment.h>
Public Member Functions | |
int | getNumChildren () const |
segidx_t | getChildIndex (int i) const |
bool | getReverseComp (int i) const |
Protected Attributes | |
segidx_t * | _childSegIndex |
bool * | _reverseComplement |
General implementation of a "Bottom" DNA segment Useful for larger numbers of children when we can't compile a zillion template instances of staticBottomSegment..
segidx_t hal::DynBottomSegment::getChildIndex | ( | int | i | ) | const [virtual] |
Get segment index for top array of ith child array
Implements hal::BottomSegment.
int hal::DynBottomSegment::getNumChildren | ( | ) | const [virtual] |
Number of descent edges to children (any of these can still be null values
Implements hal::BottomSegment.
bool hal::DynBottomSegment::getReverseComp | ( | int | i | ) | const [virtual] |
Get reverse complement flag for ith child index
Implements hal::BottomSegment.