halapi
hierarchichalalignmentformatapi
|
_genome (defined in hal::HDF5DNAIterator) | hal::HDF5DNAIterator | [mutable, protected] |
_index (defined in hal::HDF5DNAIterator) | hal::HDF5DNAIterator | [mutable, protected] |
counted_ptr< const DNAIterator > (defined in hal::DNAIterator) | hal::DNAIterator | [friend] |
counted_ptr< DNAIterator > (defined in hal::DNAIterator) | hal::DNAIterator | [friend] |
getArrayIndex() const | hal::HDF5DNAIterator | [inline, virtual] |
getChar() const | hal::HDF5DNAIterator | [inline, virtual] |
getCompChar() const | hal::HDF5DNAIterator | [inline, virtual] |
getGenome() const | hal::HDF5DNAIterator | [inline, virtual] |
getGenome() | hal::HDF5DNAIterator | [inline, virtual] |
HDF5DNAIterator(HDF5Genome *genome, hal_index_t index) (defined in hal::HDF5DNAIterator) | hal::HDF5DNAIterator | |
inRange() const (defined in hal::HDF5DNAIterator) | hal::HDF5DNAIterator | [inline] |
jumpTo(hal_size_t index) const | hal::HDF5DNAIterator | [inline, virtual] |
readString(std::string &outString, hal_size_t length, hal_bool_t reversed=false) const (defined in hal::HDF5DNAIterator) | hal::HDF5DNAIterator | [inline] |
setChar(hal_dna_t c) | hal::HDF5DNAIterator | [inline, virtual] |
toLeft() const | hal::HDF5DNAIterator | [inline, virtual] |
toRight() const | hal::HDF5DNAIterator | [inline, virtual] |
writeString(const std::string &inString, hal_size_t length, hal_bool_t reversed=false) (defined in hal::HDF5DNAIterator) | hal::HDF5DNAIterator | [inline] |
~DNAIterator()=0 (defined in hal::DNAIterator) | hal::DNAIterator | [inline, protected, pure virtual] |
~HDF5DNAIterator() (defined in hal::HDF5DNAIterator) | hal::HDF5DNAIterator |