halapi
hierarchichalalignmentformatapi
hal::HDF5DNAIterator Member List
This is the complete list of members for hal::HDF5DNAIterator, including all inherited members.
_genome (defined in hal::HDF5DNAIterator)hal::HDF5DNAIterator [mutable, protected]
_index (defined in hal::HDF5DNAIterator)hal::HDF5DNAIterator [mutable, protected]
counted_ptr< const DNAIterator > (defined in hal::DNAIterator)hal::DNAIterator [friend]
counted_ptr< DNAIterator > (defined in hal::DNAIterator)hal::DNAIterator [friend]
getArrayIndex() const hal::HDF5DNAIterator [inline, virtual]
getChar() const hal::HDF5DNAIterator [inline, virtual]
getCompChar() const hal::HDF5DNAIterator [inline, virtual]
getGenome() const hal::HDF5DNAIterator [inline, virtual]
getGenome()hal::HDF5DNAIterator [inline, virtual]
HDF5DNAIterator(HDF5Genome *genome, hal_index_t index) (defined in hal::HDF5DNAIterator)hal::HDF5DNAIterator
inRange() const (defined in hal::HDF5DNAIterator)hal::HDF5DNAIterator [inline]
jumpTo(hal_size_t index) const hal::HDF5DNAIterator [inline, virtual]
readString(std::string &outString, hal_size_t length, hal_bool_t reversed=false) const (defined in hal::HDF5DNAIterator)hal::HDF5DNAIterator [inline]
setChar(hal_dna_t c)hal::HDF5DNAIterator [inline, virtual]
toLeft() const hal::HDF5DNAIterator [inline, virtual]
toRight() const hal::HDF5DNAIterator [inline, virtual]
writeString(const std::string &inString, hal_size_t length, hal_bool_t reversed=false) (defined in hal::HDF5DNAIterator)hal::HDF5DNAIterator [inline]
~DNAIterator()=0 (defined in hal::DNAIterator)hal::DNAIterator [inline, protected, pure virtual]
~HDF5DNAIterator() (defined in hal::HDF5DNAIterator)hal::HDF5DNAIterator
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