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inc
hal.h
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/*
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* Copyright (C) 2012 by Glenn Hickey (hickey@soe.ucsc.edu)
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*
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* Released under the MIT license, see LICENSE.txt
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*/
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#ifndef ___HAL_H
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#define ___HAL_H
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#include "halDefs.h"
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#include "halCommon.h"
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#include "halPositionCache.h"
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#include "halAlignmentInstance.h"
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#include "halCLParserInstance.h"
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#include "halAlignment.h"
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#include "halCLParser.h"
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#include "halGenome.h"
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#include "halBottomSegment.h"
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#include "halBottomSegmentIterator.h"
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#include "halMetaData.h"
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#include "halSequence.h"
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#include "halSequenceIterator.h"
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#include "halDNAIterator.h"
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#include "halSegment.h"
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#include "halSlicedSegment.h"
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#include "halMappedSegment.h"
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#include "halSegmentIterator.h"
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#include "halSegmentedSequence.h"
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#include "halTopSegment.h"
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#include "halTopSegmentIterator.h"
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#include "halDNAIterator.h"
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#include "halValidate.h"
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#include "halColumnIterator.h"
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#include "halGappedTopSegmentIterator.h"
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#include "halGappedBottomSegmentIterator.h"
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#include "halRearrangement.h"
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#endif
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