halapi
hierarchichalalignmentformatapi
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hal::PositionCache Member List

This is the complete list of members for hal::PositionCache, including all inherited members.

_prev (defined in hal::PositionCache)hal::PositionCacheprotected
_set (defined in hal::PositionCache)hal::PositionCacheprotected
_size (defined in hal::PositionCache)hal::PositionCacheprotected
check() const (defined in hal::PositionCache)hal::PositionCache
clear() (defined in hal::PositionCache)hal::PositionCache
find(hal_index_t pos) const (defined in hal::PositionCache)hal::PositionCache
getIntervalSet() (defined in hal::PositionCache)hal::PositionCacheinline
insert(hal_index_t pos) (defined in hal::PositionCache)hal::PositionCache
IntervalSet typedef (defined in hal::PositionCache)hal::PositionCache
numIntervals() const (defined in hal::PositionCache)hal::PositionCacheinline
PositionCache() (defined in hal::PositionCache)hal::PositionCacheinline
size() const (defined in hal::PositionCache)hal::PositionCacheinline