7 #ifndef _HALGAPPEDSEGMENTITERATOR_H
8 #define _HALGAPPEDSEGMENTITERATOR_H
10 #include "halSegmentIterator.h"
61 friend class counted_ptr<GappedSegmentIterator>;
62 friend class counted_ptr<const GappedSegmentIterator>;
63 virtual ~GappedSegmentIterator() = 0;
66 inline GappedSegmentIterator::~GappedSegmentIterator() {}
virtual hal_size_t getChildIndex() const =0
virtual hal_size_t getNumSegments() const =0
Definition: halSegmentIterator.h:20
virtual hal_index_t getLeftArrayIndex() const =0
virtual bool getAtomic() const =0
virtual hal_size_t getNumGapBases() const =0
virtual hal_index_t getRightArrayIndex() const =0
virtual hal_size_t getGapThreshold() const =0
virtual hal_size_t getNumGaps() const =0
Definition: halGappedSegmentIterator.h:22