halapi
hierarchichalalignmentformatapi
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_array (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [mutable, protected] |
_genome (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [mutable, protected] |
_index (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [mutable, protected] |
bottomIndexOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [protected, static] |
bottomOffsetOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [protected, static] |
dataType() (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [static] |
genomeIndexOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [protected, static] |
getArrayIndex() const | hal::HDF5TopSegment | [inline, virtual] |
getBottomParseIndex() const | hal::HDF5TopSegment | [inline, virtual] |
getBottomParseOffset() const | hal::HDF5TopSegment | [inline, virtual] |
getGenome() const | hal::HDF5TopSegment | [inline, virtual] |
getGenome() | hal::HDF5TopSegment | [inline, virtual] |
getLength() const | hal::HDF5TopSegment | [inline, virtual] |
getNextParalogyIndex() const | hal::HDF5TopSegment | [inline, virtual] |
getParentIndex() const | hal::HDF5TopSegment | [inline, virtual] |
getParentReversed() const | hal::HDF5TopSegment | [inline, virtual] |
getStartPosition() const | hal::HDF5TopSegment | [inline, virtual] |
HDF5BottomSegmentIterator (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [friend] |
HDF5TopSegment(HDF5Genome *genome, HDF5ExternalArray *array, hal_index_t index) | hal::HDF5TopSegment | |
HDF5TopSegmentIterator (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [friend] |
lengthOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [protected, static] |
parentIndexOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [protected, static] |
parentReversedOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [protected, static] |
parIndexOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [protected, static] |
setBottomParseIndex(hal_index_t botParseIdx) | hal::HDF5TopSegment | [inline, virtual] |
setBottomParseOffset(hal_offset_t botParseOffset) | hal::HDF5TopSegment | [inline, virtual] |
setLength(hal_size_t length) | hal::HDF5TopSegment | [inline, virtual] |
setNextParalogyIndex(hal_index_t parIdx) | hal::HDF5TopSegment | [inline, virtual] |
setParentIndex(hal_index_t parIdx) | hal::HDF5TopSegment | [inline, virtual] |
setParentReversed(hal_bool_t isReversed) | hal::HDF5TopSegment | [inline, virtual] |
setStartPosition(hal_index_t startPos) | hal::HDF5TopSegment | [inline, virtual] |
totalSize (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | [protected, static] |
~HDF5TopSegment() | hal::HDF5TopSegment | |
~Segment()=0 | hal::Segment | [inline, protected, pure virtual] |
~TopSegment()=0 | hal::TopSegment | [inline, protected, pure virtual] |