halapi
hierarchichalalignmentformatapi
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hal::ColumnIterator Member List

This is the complete list of members for hal::ColumnIterator, including all inherited members.

ColumnMap typedef (defined in hal::ColumnIterator)hal::ColumnIterator
counted_ptr< ColumnIterator > (defined in hal::ColumnIterator)hal::ColumnIteratorfriend
counted_ptr< const ColumnIterator > (defined in hal::ColumnIterator)hal::ColumnIteratorfriend
defragment() const =0hal::ColumnIteratorpure virtual
DNASet typedef (defined in hal::ColumnIterator)hal::ColumnIterator
getArrayIndex() const =0hal::ColumnIteratorpure virtual
getColumnMap() const =0hal::ColumnIteratorpure virtual
getReferenceGenome() const =0hal::ColumnIteratorpure virtual
getReferenceSequence() const =0hal::ColumnIteratorpure virtual
getReferenceSequencePosition() const =0hal::ColumnIteratorpure virtual
isCanonicalOnRef() const =0hal::ColumnIteratorpure virtual
lastColumn() const =0hal::ColumnIteratorpure virtual
print(std::ostream &os) const =0hal::ColumnIteratorpure virtual
toRight() const =0hal::ColumnIteratorpure virtual
toSite(hal_index_t columnIndex, hal_index_t lastIndex, bool clearCache=false) const =0hal::ColumnIteratorpure virtual
~ColumnIterator()=0 (defined in hal::ColumnIterator)hal::ColumnIteratorinlineprotectedpure virtual