halapi
hierarchichalalignmentformatapi
hal::HDF5BottomSegmentIterator Member List
This is the complete list of members for hal::HDF5BottomSegmentIterator, including all inherited members.
_bottomSegment (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [protected]
_endOffset (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [mutable, protected]
_reversed (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [mutable, protected]
_startOffset (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [mutable, protected]
copy() (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
copy() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
counted_ptr< BottomSegmentIterator > (defined in hal::BottomSegmentIterator)hal::BottomSegmentIterator [friend]
counted_ptr< const BottomSegmentIterator > (defined in hal::BottomSegmentIterator)hal::BottomSegmentIterator [friend]
counted_ptr< const SegmentIterator > (defined in hal::SegmentIterator)hal::SegmentIterator [friend]
counted_ptr< SegmentIterator > (defined in hal::SegmentIterator)hal::SegmentIterator [friend]
getBottomSegment() (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
getBottomSegment() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
getEndOffset() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
getLength() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
getReversed() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
getStartOffset() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
getString(std::string &outString) const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
HDF5BottomSegmentIterator(HDF5Genome *genome, hal_index_t index, hal_size_t startOffset=0, hal_size_t endOffset=0, hal_bool_t inverted=false) (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator
HDF5TopSegmentIterator (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [friend]
inRange() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [inline]
toLeft() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
toNextParalogy() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
toParent(TopSegmentIteratorConstPtr ts) const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
toParseDown(TopSegmentIteratorConstPtr ts) const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
toReverse() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
toRight() const (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator [virtual]
~BottomSegmentIterator()=0 (defined in hal::BottomSegmentIterator)hal::BottomSegmentIterator [inline, protected, pure virtual]
~HDF5BottomSegmentIterator() (defined in hal::HDF5BottomSegmentIterator)hal::HDF5BottomSegmentIterator
~SegmentIterator()=0 (defined in hal::SegmentIterator)hal::SegmentIterator [inline, protected, pure virtual]
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