LICENSE
bin/.gtotree-post-link.sh
bin/GToTree
bin/gtt-align-and-trim-parallel.sh
bin/gtt-amino-acid-parallel.sh
bin/gtt-amino-acid-serial.sh
bin/gtt-append-fasta-headers
bin/gtt-cat-alignments
bin/gtt-check-or-setup-GTDB-files
bin/gtt-check-wanted-lineage-info
bin/gtt-clean-after-test.sh
bin/gtt-combine-kofamscan-results.sh
bin/gtt-count-bases-per-seq
bin/gtt-data-locations
bin/gtt-download-ncbi-file
bin/gtt-fasta-parallel-nt.sh
bin/gtt-fasta-parallel.sh
bin/gtt-fasta-serial-nt.sh
bin/gtt-fasta-serial.sh
bin/gtt-filter-parallel.sh
bin/gtt-filter-seqs-by-length
bin/gtt-gen-KO-iToL-files.sh
bin/gtt-gen-SCG-HMMs
bin/gtt-gen-itol-map
bin/gtt-gen-pfam-iToL-files.sh
bin/gtt-genbank-parallel.sh
bin/gtt-genbank-serial.sh
bin/gtt-genbank-to-AA-seqs
bin/gtt-genbank-to-fasta
bin/gtt-get-accessions-from-GTDB
bin/gtt-get-additional-pfam-targets.sh
bin/gtt-get-kofamscan-data
bin/gtt-get-median.sh
bin/gtt-get-ncbi-assembly-tables
bin/gtt-get-ncbi-tax-data
bin/gtt-gtdb-helpers
bin/gtt-hmms
bin/gtt-ncbi-helpers
bin/gtt-ncbi-parallel-nt.sh
bin/gtt-ncbi-parallel.sh
bin/gtt-ncbi-serial-nt.sh
bin/gtt-ncbi-serial.sh
bin/gtt-parse-assembly-summary-file
bin/gtt-parse-fasta-by-headers
bin/gtt-parse-gtdb-assembly-summary-file
bin/gtt-parse-kofamscan-targets.sh
bin/gtt-pfam-search
bin/gtt-remove-all-gap-seqs-from-alignment
bin/gtt-rename-fasta-headers
bin/gtt-reorder-fasta
bin/gtt-run-additional-pfam-search.sh
bin/gtt-run-kofamscan.sh
bin/gtt-slim-ncbi-assembly-summary
bin/gtt-store-SCG-HMMs
bin/gtt-subset-GTDB-accessions
bin/gtt-swap-ids
bin/gtt-test.sh
bin/gtt-update-ncbi-taxonomy
etc/conda/activate.d/gtotree.sh
share/gtotree/gtdb_tax_info/GTDB-arc-and-bac-metadata.tsv
share/gtotree/hmm_sets/hmm-sources-and-info.tsv
share/gtotree/kofamscan_data/README
share/gtotree/ncbi_assembly_summaries/date-retrieved.txt
share/gtotree/ncbi_tax_info/nodes.dmp
