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java.lang.Objectorg.irisa.genouest.logol.utils.MySequence
org.irisa.genouest.logol.utils.MyRevCompSequence
public class MyRevCompSequence
Simple Sequence implementation to fix memory issues with BioJava DNATools functions. Implements minimum number of functions for sequence data manipulation (no symbols and features) Fix : 1660
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder |
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org.biojava.bio.seq.FeatureHolder.EmptyFeatureHolder |
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable |
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org.biojava.bio.Annotatable.AnnotationForwarder |
Field Summary |
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Fields inherited from interface org.biojava.bio.symbol.SymbolList |
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EDIT, EMPTY_LIST |
Fields inherited from interface org.biojava.bio.seq.FeatureHolder |
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EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA |
Fields inherited from interface org.biojava.bio.Annotatable |
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ANNOTATION |
Constructor Summary | |
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MyRevCompSequence(org.biojava.bio.seq.Sequence seq)
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Method Summary |
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Methods inherited from class org.irisa.genouest.logol.utils.MySequence |
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addChangeListener, addChangeListener, containsFeature, countFeatures, createFeature, edit, features, filter, filter, getAlphabet, getAnnotation, getContent, getHeader, getName, getSchema, getURN, isUnchanging, iterator, length, removeChangeListener, removeChangeListener, removeFeature, seqString, setContent, setHeader, setPosition, subList, subStr, symbolAt, toList, writeFasta |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public MyRevCompSequence(org.biojava.bio.seq.Sequence seq)
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