Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.4.0, (Release date: Mon Aug 16 16:18:19 2021 -0700)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE nrmix.nseqs.100.100bp.seed.1.fa
Database contains 2100 sequences, 210000 residues
MOTIFS xstreme_example_output_files/streme_out/streme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1-CCASYAGRGGGCGCY | 15 | CCACCAGGGGGCGCC |
2-GCTGAGTCATN | 11 | GCTGAGTCATG |
3-GCGCATGCGCAC | 12 | GCGCATGCGCAC |
4-CACTTCCTGKT | 11 | CACTTCCTGTT |
5-AGATAAGG | 8 | AGATAAGG |
6-CCCCGCCCCCD | 11 | CCCCGCCCCCT |
7-CAAGATGGC | 9 | CAAGATGGC |
8-GGTCACGTGABBS | 13 | GGTCACGTGACGC |
Random model letter frequencies (xstreme_example_output_files/background):
A 0.222 C 0.278 G 0.278 T 0.222
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
4-CACTTCCTGKT | STREME-4 | 9 | + | 37592411 | 37592421 | 1.99e-07 | 0.0282 | CACTTCCTGTT |
4-CACTTCCTGKT | STREME-4 | 2 | + | 73162101 | 73162111 | 1.99e-07 | 0.0282 | CACTTCCTGTT |
4-CACTTCCTGKT | STREME-4 | X | + | 2549539 | 2549549 | 4.47e-07 | 0.0282 | CACTTCCTGGT |
4-CACTTCCTGKT | STREME-4 | X | + | 2549568 | 2549578 | 4.47e-07 | 0.0282 | CACTTCCTGGT |
4-CACTTCCTGKT | STREME-4 | X | + | 100306664 | 100306674 | 4.47e-07 | 0.0282 | CACTTCCTGGT |
4-CACTTCCTGKT | STREME-4 | 9 | - | 100174678 | 100174688 | 4.47e-07 | 0.0282 | CACTTCCTGGT |
4-CACTTCCTGKT | STREME-4 | 2 | + | 200320282 | 200320292 | 6.46e-07 | 0.0282 | CACTTCCTGTA |
4-CACTTCCTGKT | STREME-4 | 4 | + | 10182693 | 10182703 | 8.95e-07 | 0.0282 | CACTTCCTGTC |
4-CACTTCCTGKT | STREME-4 | 17 | + | 45148509 | 45148519 | 8.95e-07 | 0.0282 | CACTTCCTGTC |
4-CACTTCCTGKT | STREME-4 | 17 | + | 45148533 | 45148543 | 8.95e-07 | 0.0282 | CACTTCCTGTC |
4-CACTTCCTGKT | STREME-4 | 15 | + | 85640353 | 85640363 | 8.95e-07 | 0.0282 | CACTTCCTGTC |
4-CACTTCCTGKT | STREME-4 | 17 | - | 41150196 | 41150206 | 8.95e-07 | 0.0282 | CACTTCCTGTC |
4-CACTTCCTGKT | STREME-4 | 10 | + | 64134797 | 64134807 | 1.5e-06 | 0.0299 | AACTTCCTGTT |
4-CACTTCCTGKT | STREME-4 | 10 | + | 73291290 | 73291300 | 1.5e-06 | 0.0299 | CACTTCCTGTG |
4-CACTTCCTGKT | STREME-4 | 11 | + | 118747511 | 118747521 | 1.5e-06 | 0.0299 | CACTTCCTGTG |
4-CACTTCCTGKT | STREME-4 | 1 | + | 219328402 | 219328412 | 1.5e-06 | 0.0299 | CACTTCCTGTG |
4-CACTTCCTGKT | STREME-4 | 16 | - | 30961274 | 30961284 | 1.5e-06 | 0.0299 | CACTTCCTGTG |
4-CACTTCCTGKT | STREME-4 | 5 | - | 71894481 | 71894491 | 1.5e-06 | 0.0299 | AACTTCCTGTT |
4-CACTTCCTGKT | STREME-4 | 1 | - | 155210888 | 155210898 | 1.5e-06 | 0.0299 | CACTTCCTGTG |
4-CACTTCCTGKT | STREME-4 | 17 | - | 27911736 | 27911746 | 1.66e-06 | 0.0314 | TACTTCCTGTT |
4-CACTTCCTGKT | STREME-4 | 16 | - | 83973042 | 83973052 | 1.86e-06 | 0.0334 | GACTTCCTGTT |
4-CACTTCCTGKT | STREME-4 | 16 | + | 27279965 | 27279975 | 2.11e-06 | 0.0362 | CACTTCCGGTT |
4-CACTTCCTGKT | STREME-4 | 1 | - | 36863979 | 36863989 | 2.36e-06 | 0.0387 | CACTTCCTGGA |
4-CACTTCCTGKT | STREME-4 | 1 | + | 17262647 | 17262657 | 3.34e-06 | 0.0445 | CACTTCCTGGG |
4-CACTTCCTGKT | STREME-4 | 3 | + | 186600584 | 186600594 | 3.34e-06 | 0.0445 | CACTTCCTGGG |
4-CACTTCCTGKT | STREME-4 | 12 | - | 8010450 | 8010460 | 3.34e-06 | 0.0445 | CACTTCCTGGG |
4-CACTTCCTGKT | STREME-4 | 6 | - | 112942710 | 112942720 | 3.34e-06 | 0.0445 | AACTTCCTGGT |
4-CACTTCCTGKT | STREME-4 | 1 | - | 5948648 | 5948658 | 3.54e-06 | 0.0445 | CACTTCCTGAA |
4-CACTTCCTGKT | STREME-4 | 20 | - | 44834667 | 44834677 | 3.54e-06 | 0.0445 | CACTTCCTGAA |
4-CACTTCCTGKT | STREME-4 | X | - | 155117827 | 155117837 | 3.54e-06 | 0.0445 | CACTTCCTGAA |
4-CACTTCCTGKT | STREME-4 | 19 | + | 8261389 | 8261399 | 4.14e-06 | 0.046 | CACTTCCTCTT |
4-CACTTCCTGKT | STREME-4 | 15 | + | 45016494 | 45016504 | 4.14e-06 | 0.046 | CACTTCCTCTT |
4-CACTTCCTGKT | STREME-4 | 6 | + | 97364948 | 97364958 | 4.14e-06 | 0.046 | CACTTCCTCTT |
4-CACTTCCTGKT | STREME-4 | 6 | - | 36586656 | 36586666 | 4.14e-06 | 0.046 | CACTTCCTCTT |
4-CACTTCCTGKT | STREME-4 | 4 | + | 109541474 | 109541484 | 4.79e-06 | 0.0503 | AACTTCCTGTC |
4-CACTTCCTGKT | STREME-4 | 14 | + | 68887064 | 68887074 | 5.19e-06 | 0.0503 | AACTTCCTGAT |
4-CACTTCCTGKT | STREME-4 | 7 | + | 106415181 | 106415191 | 5.19e-06 | 0.0503 | AACTTCCTGAT |
4-CACTTCCTGKT | STREME-4 | 10 | + | 121447430 | 121447440 | 5.19e-06 | 0.0503 | AACTTCCTGAT |
4-CACTTCCTGKT | STREME-4 | 17 | - | 55456744 | 55456754 | 5.19e-06 | 0.0503 | AACTTCCTGAT |
4-CACTTCCTGKT | STREME-4 | 8 | + | 27949631 | 27949641 | 6.06e-06 | 0.0533 | CACTTCCGGGT |
4-CACTTCCTGKT | STREME-4 | 17 | + | 35969269 | 35969279 | 6.06e-06 | 0.0533 | CACTTCCGGGT |
4-CACTTCCTGKT | STREME-4 | 22 | - | 22020093 | 22020103 | 6.06e-06 | 0.0533 | CACTTCCGGGT |
4-CACTTCCTGKT | STREME-4 | 19 | - | 52772641 | 52772651 | 6.06e-06 | 0.0533 | CACTTCCGGGT |
4-CACTTCCTGKT | STREME-4 | 9 | + | 136218851 | 136218861 | 6.46e-06 | 0.0543 | CACTTCCTAGT |
4-CACTTCCTGKT | STREME-4 | 9 | + | 136218851 | 136218861 | 6.46e-06 | 0.0543 | CACTTCCTAGT |
4-CACTTCCTGKT | STREME-4 | 14 | - | 105533620 | 105533630 | 6.96e-06 | 0.0572 | GACTTCCTGTC |
4-CACTTCCTGKT | STREME-4 | 19 | + | 1275606 | 1275616 | 7.36e-06 | 0.0592 | TACTTCCTGAT |
4-CACTTCCTGKT | STREME-4 | 6 | + | 12093045 | 12093055 | 8.01e-06 | 0.063 | GACTTCCTGTG |
4-CACTTCCTGKT | STREME-4 | 17 | + | 43657680 | 43657690 | 8.17e-06 | 0.063 | CACTTCCTATA |
4-CACTTCCTGKT | STREME-4 | 19 | - | 11616444 | 11616454 | 8.48e-06 | 0.0641 | CACTTCCGGTC |
4-CACTTCCTGKT | STREME-4 | 11 | - | 111435820 | 111435830 | 1.06e-05 | 0.0777 | AACTTCCTGGC |
4-CACTTCCTGKT | STREME-4 | 18 | + | 45408133 | 45408143 | 1.11e-05 | 0.0777 | AACTTCCTGGG |
4-CACTTCCTGKT | STREME-4 | 11 | + | 111957317 | 111957327 | 1.13e-05 | 0.0777 | GACTTCCGGTT |
4-CACTTCCTGKT | STREME-4 | 1 | - | 160509925 | 160509935 | 1.15e-05 | 0.0777 | CACTTCCTCTA |
4-CACTTCCTGKT | STREME-4 | 1 | - | 160509925 | 160509935 | 1.15e-05 | 0.0777 | CACTTCCTCTA |
4-CACTTCCTGKT | STREME-4 | 6 | - | 33951967 | 33951977 | 1.17e-05 | 0.0777 | TACTTCCTGGA |
4-CACTTCCTGKT | STREME-4 | 4 | - | 123286169 | 123286179 | 1.17e-05 | 0.0777 | TACTTCCTGGA |
4-CACTTCCTGKT | STREME-4 | 1 | + | 45452805 | 45452815 | 1.24e-05 | 0.0797 | GACTTCCTATT |
4-CACTTCCTGKT | STREME-4 | 11 | - | 120215039 | 120215049 | 1.27e-05 | 0.0797 | CACTTCCTCTC |
4-CACTTCCTGKT | STREME-4 | 9 | - | 115774277 | 115774287 | 1.29e-05 | 0.0797 | TACTTCCTGGC |
4-CACTTCCTGKT | STREME-4 | 7 | + | 98923294 | 98923304 | 1.32e-05 | 0.0797 | CACTTCCGGGA |
4-CACTTCCTGKT | STREME-4 | 1 | + | 56982058 | 56982068 | 1.37e-05 | 0.0797 | CACTTCCTCAT |
4-CACTTCCTGKT | STREME-4 | 8 | + | 125462316 | 125462326 | 1.39e-05 | 0.0797 | AACTTCCTGAC |
4-CACTTCCTGKT | STREME-4 | 5 | - | 95064484 | 95064494 | 1.39e-05 | 0.0797 | AACTTCCTGAC |
4-CACTTCCTGKT | STREME-4 | 1 | + | 68368511 | 68368521 | 1.43e-05 | 0.0797 | AACTTCCTCTT |
4-CACTTCCTGKT | STREME-4 | 9 | + | 101137395 | 101137405 | 1.43e-05 | 0.0797 | CACTTCCTCTG |
4-CACTTCCTGKT | STREME-4 | 2 | + | 102690877 | 102690887 | 1.43e-05 | 0.0797 | AACTTCCTCTT |
4-CACTTCCTGKT | STREME-4 | 7 | - | 75443027 | 75443037 | 1.43e-05 | 0.0797 | AACTTCCTCTT |
4-CACTTCCTGKT | STREME-4 | 8 | - | 62599939 | 62599949 | 1.51e-05 | 0.0826 | GACTTCCTGGG |
4-CACTTCCTGKT | STREME-4 | 7 | + | 105658950 | 105658960 | 1.53e-05 | 0.0826 | CACTTCCTAGA |
4-CACTTCCTGKT | STREME-4 | 5 | + | 14696181 | 14696191 | 1.65e-05 | 0.0874 | GACTTCCTGAA |
4-CACTTCCTGKT | STREME-4 | 3 | + | 15419637 | 15419647 | 1.71e-05 | 0.0874 | AACTTCCGGGT |
4-CACTTCCTGKT | STREME-4 | 17 | - | 80009566 | 80009576 | 1.71e-05 | 0.0874 | CACTTCCGGGG |
4-CACTTCCTGKT | STREME-4 | 1 | - | 205296238 | 205296248 | 1.75e-05 | 0.0874 | CACTTCCTAGC |
4-CACTTCCTGKT | STREME-4 | 10 | + | 33270637 | 33270647 | 1.78e-05 | 0.0874 | CACTTCCTGCC |
4-CACTTCCTGKT | STREME-4 | 10 | - | 43892633 | 43892643 | 1.78e-05 | 0.0874 | CACTTCCTGCC |
4-CACTTCCTGKT | STREME-4 | 10 | - | 73291303 | 73291313 | 1.78e-05 | 0.0874 | CACTTCCTGCC |
4-CACTTCCTGKT | STREME-4 | 20 | + | 2506210 | 2506220 | 1.8e-05 | 0.0874 | TACTTCCTGAC |
4-CACTTCCTGKT | STREME-4 | 1 | - | 116915637 | 116915647 | 2.06e-05 | 0.0987 | CACTTCCTAAA |
4-CACTTCCTGKT | STREME-4 | 7 | + | 99214374 | 99214384 | 2.09e-05 | 0.0989 | CACTTCCGGAC |
4-CACTTCCTGKT | STREME-4 | 2 | + | 9374859 | 9374869 | 2.16e-05 | 0.0997 | CACATCCTGTT |
4-CACTTCCTGKT | STREME-4 | 1 | - | 109820011 | 109820021 | 2.16e-05 | 0.0997 | CACATCCTGTT |
4-CACTTCCTGKT | STREME-4 | 8 | - | 10873860 | 10873870 | 2.23e-05 | 0.102 | GACTTCCGGGT |
4-CACTTCCTGKT | STREME-4 | 16 | - | 2653102 | 2653112 | 2.31e-05 | 0.104 | CACTTCCGGAG |
4-CACTTCCTGKT | STREME-4 | 9 | - | 33165726 | 33165736 | 2.39e-05 | 0.106 | TACTTCCGGTA |
4-CACTTCCTGKT | STREME-4 | 6 | + | 139697085 | 139697095 | 2.52e-05 | 0.111 | GACTTCCTGCT |
4-CACTTCCTGKT | STREME-4 | 3 | + | 156272891 | 156272901 | 2.81e-05 | 0.122 | GACTTCCGGAT |
4-CACTTCCTGKT | STREME-4 | 11 | - | 95930928 | 95930938 | 2.83e-05 | 0.122 | CACTTCCTCAA |
4-CACTTCCTGKT | STREME-4 | 7 | + | 102004044 | 102004054 | 2.89e-05 | 0.123 | GACTTCCGGTG |
4-CACTTCCTGKT | STREME-4 | 17 | - | 72304281 | 72304291 | 2.98e-05 | 0.125 | CACTTCCTACT |
4-CACTTCCTGKT | STREME-4 | 10 | + | 94515962 | 94515972 | 3.07e-05 | 0.127 | CACTTCCTCAC |
4-CACTTCCTGKT | STREME-4 | 17 | + | 25801001 | 25801011 | 3.15e-05 | 0.129 | AACTTCCTCTC |
4-CACTTCCTGKT | STREME-4 | 1 | - | 207483188 | 207483198 | 3.32e-05 | 0.135 | CACTTCCCGTT |
4-CACTTCCTGKT | STREME-4 | 12 | + | 696911 | 696921 | 3.61e-05 | 0.141 | CACTTACTGAT |
4-CACTTCCTGKT | STREME-4 | 9 | - | 19380103 | 19380113 | 3.63e-05 | 0.141 | CACTTCCGCTA |
4-CACTTCCTGKT | STREME-4 | 17 | - | 41150234 | 41150244 | 3.63e-05 | 0.141 | CACTTCCGCTA |
4-CACTTCCTGKT | STREME-4 | 13 | - | 25192646 | 25192656 | 3.7e-05 | 0.141 | TACTTCCGGGA |
4-CACTTCCTGKT | STREME-4 | 15 | - | 41408625 | 41408635 | 3.7e-05 | 0.141 | TACTTCCGGGA |
4-CACTTCCTGKT | STREME-4 | 3 | + | 152153590 | 152153600 | 3.7e-05 | 0.141 | GACTTCCTCTC |
4-CACTTCCTGKT | STREME-4 | 5 | - | 10334942 | 10334952 | 3.78e-05 | 0.143 | CACTTCCTCCT |
4-CACTTCCTGKT | STREME-4 | 8 | + | 8203919 | 8203929 | 3.87e-05 | 0.143 | GACTTCCTCAT |
4-CACTTCCTGKT | STREME-4 | 6 | - | 29520301 | 29520311 | 3.87e-05 | 0.143 | GACTTCCTCAT |
4-CACTTCCTGKT | STREME-4 | 21 | + | 30365073 | 30365083 | 4.06e-05 | 0.146 | CACTTCCGCTC |
4-CACTTCCTGKT | STREME-4 | 19 | + | 44645520 | 44645530 | 4.06e-05 | 0.146 | CACTTCCGCTC |
4-CACTTCCTGKT | STREME-4 | 5 | - | 157285973 | 157285983 | 4.06e-05 | 0.146 | CACTTCCGCTC |
4-CACTTCCTGKT | STREME-4 | 9 | + | 19380038 | 19380048 | 4.36e-05 | 0.154 | AACTTCCGCTT |
4-CACTTCCTGKT | STREME-4 | 5 | + | 60627866 | 60627876 | 4.36e-05 | 0.154 | CACTTCCGCTG |
4-CACTTCCTGKT | STREME-4 | X | - | 62654540 | 62654550 | 4.43e-05 | 0.155 | AACATCCTGTT |
4-CACTTCCTGKT | STREME-4 | 13 | + | 115000129 | 115000139 | 4.47e-05 | 0.155 | GACTTCCGGGG |
4-CACTTCCTGKT | STREME-4 | 2 | - | 178548059 | 178548069 | 4.63e-05 | 0.159 | AACTTCCGGAG |
4-CACTTCCTGKT | STREME-4 | 16 | - | 84220481 | 84220491 | 4.7e-05 | 0.16 | GACTTCCTGCC |
4-CACTTCCTGKT | STREME-4 | 17 | - | 46555645 | 46555655 | 4.76e-05 | 0.161 | GACTTCCGGAA |
4-CACTTCCTGKT | STREME-4 | 16 | - | 77690889 | 77690899 | 5.21e-05 | 0.174 | AACTTCCTCGG |
4-CACTTCCTGKT | STREME-4 | 15 | - | 35261817 | 35261827 | 5.41e-05 | 0.178 | AACTTCCGGCT |
4-CACTTCCTGKT | STREME-4 | 2 | - | 12310248 | 12310258 | 5.42e-05 | 0.178 | CACTTACTATT |
4-CACTTCCTGKT | STREME-4 | 11 | - | 13010898 | 13010908 | 5.5e-05 | 0.178 | CACTTCCTACC |
4-CACTTCCTGKT | STREME-4 | 20 | - | 32006928 | 32006938 | 5.54e-05 | 0.178 | TACTTCCTAAC |
4-CACTTCCTGKT | STREME-4 | 16 | + | 83928872 | 83928882 | 5.56e-05 | 0.178 | CACTTACTGGC |
4-CACTTCCTGKT | STREME-4 | 19 | - | 633421 | 633431 | 6.15e-05 | 0.195 | TACTTCCGGCT |
4-CACTTCCTGKT | STREME-4 | 7 | + | 132937541 | 132937551 | 6.19e-05 | 0.195 | CACTTCCGCGC |
4-CACTTCCTGKT | STREME-4 | 2 | + | 128051525 | 128051535 | 6.29e-05 | 0.197 | GACTTCCGGCT |
4-CACTTCCTGKT | STREME-4 | 2 | + | 172017088 | 172017098 | 6.56e-05 | 0.203 | CACTTCCGCGG |
4-CACTTCCTGKT | STREME-4 | 3 | - | 10283989 | 10283999 | 6.61e-05 | 0.203 | CACATCCTGGG |
4-CACTTCCTGKT | STREME-4 | X | + | 124138657 | 124138667 | 6.67e-05 | 0.203 | CACTTACTGAC |
4-CACTTCCTGKT | STREME-4 | 12 | + | 8179065 | 8179075 | 6.78e-05 | 0.204 | CACTTCCTCCC |
4-CACTTCCTGKT | STREME-4 | 6 | + | 97364934 | 97364944 | 6.78e-05 | 0.204 | CACTTCCTCCC |
4-CACTTCCTGKT | STREME-4 | 6 | - | 149350930 | 149350940 | 6.91e-05 | 0.206 | AACTTACTGAT |
4-CACTTCCTGKT | STREME-4 | 16 | + | 14726453 | 14726463 | 7.03e-05 | 0.208 | CACTTCCTCCG |
4-CACTTCCTGKT | STREME-4 | 8 | - | 61564902 | 61564912 | 7.31e-05 | 0.212 | CACTTCCGCAC |
4-CACTTCCTGKT | STREME-4 | 5 | + | 125796037 | 125796047 | 7.31e-05 | 0.212 | CACTTCCGCAC |
4-CACTTCCTGKT | STREME-4 | 9 | + | 101137441 | 101137451 | 7.91e-05 | 0.226 | TACTTCCTCCT |
4-CACTTCCTGKT | STREME-4 | 16 | + | 15665488 | 15665498 | 8.02e-05 | 0.226 | GACTTCCTCCT |
4-CACTTCCTGKT | STREME-4 | 1 | - | 31229452 | 31229462 | 8.02e-05 | 0.226 | GACTTCCTCCT |
4-CACTTCCTGKT | STREME-4 | 12 | - | 53552128 | 53552138 | 8.02e-05 | 0.226 | GACTTCCTCCT |
4-CACTTCCTGKT | STREME-4 | 15 | + | 89545534 | 89545544 | 8.41e-05 | 0.232 | CACTTCCGCCT |
4-CACTTCCTGKT | STREME-4 | 9 | - | 128023799 | 128023809 | 8.41e-05 | 0.232 | CACTTCCGCCT |
4-CACTTCCTGKT | STREME-4 | 5 | + | 55544872 | 55544882 | 8.43e-05 | 0.232 | CACATCCTGCT |
4-CACTTCCTGKT | STREME-4 | 1 | - | 95743676 | 95743686 | 8.48e-05 | 0.232 | TACATCCTGAT |
4-CACTTCCTGKT | STREME-4 | 2 | - | 128051561 | 128051571 | 8.75e-05 | 0.238 | GACATCCTGTG |
4-CACTTCCTGKT | STREME-4 | 1 | - | 32405385 | 32405395 | 9.32e-05 | 0.252 | AACATCCTGGA |
4-CACTTCCTGKT | STREME-4 | 1 | + | 1790059 | 1790069 | 9.57e-05 | 0.252 | CACATCCTAAT |
4-CACTTCCTGKT | STREME-4 | X | - | 65144722 | 65144732 | 9.62e-05 | 0.252 | CACTTCCCCTT |
4-CACTTCCTGKT | STREME-4 | 7 | + | 117432229 | 117432239 | 9.62e-05 | 0.252 | CACTTCCCCTT |
4-CACTTCCTGKT | STREME-4 | 5 | - | 133702706 | 133702716 | 9.62e-05 | 0.252 | CACTTCCCCTT |
Command line:
fimo --parse-genomic-coord --verbosity 1 --oc xstreme_example_output_files/fimo_out_6 --bgfile xstreme_example_output_files/background --motif 4-CACTTCCTGKT xstreme_example_output_files/streme_out/streme.xml nrmix.nseqs.100.100bp.seed.1.fa
Settings:
output_directory = xstreme_example_output_files/fimo_out_6 | MEME file name = xstreme_example_output_files/streme_out/streme.xml | sequence file name = nrmix.nseqs.100.100bp.seed.1.fa |
background file name = xstreme_example_output_files/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.