Interfaces for HDF5-Based Single Cell File Formats


[Up] [Top]

Documentation for package ‘SeuratDisk’ version 0.0.0.9021

Help Pages

SeuratDisk-package SeuratDisk: Interfaces for HDF5-Based Single Cell File Formats
AppendData Append data from an h5Seurat file to a preexisting 'Seurat' object
AppendData.character Append data from an h5Seurat file to a preexisting 'Seurat' object
AppendData.H5File Append data from an h5Seurat file to a preexisting 'Seurat' object
AppendData.h5Seurat Append data from an h5Seurat file to a preexisting 'Seurat' object
as.array Load data from an HDF5 File
as.array.H5D Load data from an HDF5 File
as.data.frame Load data from an HDF5 File
as.data.frame.H5D Load data from an HDF5 File
as.data.frame.H5Group Load data from an HDF5 File
as.factor Load data from an HDF5 File
as.factor-method Load data from an HDF5 File
as.h5Seurat Save a 'Seurat' object to an h5Seurat file
as.h5Seurat.default Save a 'Seurat' object to an h5Seurat file
as.h5Seurat.H5File Save a 'Seurat' object to an h5Seurat file
as.h5Seurat.Seurat Save a 'Seurat' object to an h5Seurat file
as.list Load data from an HDF5 File
as.list-method Load data from an HDF5 File
as.logical Load data from an HDF5 File
as.logical.H5D Load data from an HDF5 File
as.loom Save a 'Seurat' object to a loom file
as.loom.default Save a 'Seurat' object to a loom file
as.loom.H5File Save a 'Seurat' object to a loom file
as.loom.Seurat Save a 'Seurat' object to a loom file
as.matrix Load data from an HDF5 File
as.matrix.H5D Load data from an HDF5 File
as.matrix.H5Group Load data from an HDF5 File
as.Seurat Load a saved 'Seurat' object from an h5Seurat file
as.Seurat Loom-file Loading
as.Seurat.h5Seurat Load a saved 'Seurat' object from an h5Seurat file
as.Seurat.loom Loom-file Loading
as.sparse Load data from an HDF5 File
as.sparse.H5D Load data from an HDF5 File
as.sparse.H5Group Load data from an HDF5 File
Cells Seurat bindings for h5Seurat files
Cells.h5Seurat Seurat bindings for h5Seurat files
Connect Connect to a single-cell HDF5 dataset
Convert Convert an on-disk single-cell dataset to another format
Convert.character Convert an on-disk single-cell dataset to another format
Convert.H5File Convert an on-disk single-cell dataset to another format
Convert.h5Seurat Convert an on-disk single-cell dataset to another format
DefaultAssay Seurat bindings for h5Seurat files
DefaultAssay Seurat binding for loom files
DefaultAssay.h5Seurat Seurat bindings for h5Seurat files
DefaultAssay.loom Seurat binding for loom files
DefaultAssay<-.h5Seurat Seurat bindings for h5Seurat files
dim Seurat binding for loom files
dim.loom Seurat binding for loom files
dimnames Load data from an HDF5 File
dimnames.H5D Load data from an HDF5 File
GetSCDisk Get and Register 'scdisk' Subclasses
h5Seurat A class for connections to h5Seurat files
h5Seurat-bindings Seurat bindings for h5Seurat files
h5Seurat-class A class for connections to h5Seurat files
Idents Seurat bindings for h5Seurat files
Idents.h5Seurat Seurat bindings for h5Seurat files
IsGlobal Seurat bindings for h5Seurat files
IsGlobal.H5Group Seurat bindings for h5Seurat files
Key Seurat bindings for h5Seurat files
Key.H5Group Seurat bindings for h5Seurat files
LoadH5Seurat Load a saved 'Seurat' object from an h5Seurat file
LoadH5Seurat.character Load a saved 'Seurat' object from an h5Seurat file
LoadH5Seurat.H5File Load a saved 'Seurat' object from an h5Seurat file
LoadH5Seurat.h5Seurat Load a saved 'Seurat' object from an h5Seurat file
LoadLoom Loom-file Loading
LoadLoom.character Loom-file Loading
LoadLoom.H5File Loom-file Loading
LoadLoom.loom Loom-file Loading
loom A class for connections to loom files
loom-bindings Seurat binding for loom files
loom-class A class for connections to loom files
Project Seurat bindings for h5Seurat files
Project.h5Seurat Seurat bindings for h5Seurat files
Project<-.h5Seurat Seurat bindings for h5Seurat files
ReadH5 Load data from an HDF5 File
RegisterSCDisk Get and Register 'scdisk' Subclasses
SaveH5Seurat Save a 'Seurat' object to an h5Seurat file
SaveH5Seurat.default Save a 'Seurat' object to an h5Seurat file
SaveH5Seurat.Seurat Save a 'Seurat' object to an h5Seurat file
SaveLoom Save a 'Seurat' object to a loom file
SaveLoom.default Save a 'Seurat' object to a loom file
SaveLoom.Seurat Save a 'Seurat' object to a loom file
scdisk A disk-based object for single-cell analysis
scdisk-class A disk-based object for single-cell analysis
SeuratDisk SeuratDisk: Interfaces for HDF5-Based Single Cell File Formats
Stdev.h5Seurat Seurat bindings for h5Seurat files
Transpose Transpose a matrix
Transpose.dgCMatrix Transpose a matrix
Transpose.H5D Transpose a matrix
Transpose.H5Group Transpose a matrix
WriteH5Group Write data to an HDF5 group
WriteH5Group-method Write data to an HDF5 group
_PACKAGE SeuratDisk: Interfaces for HDF5-Based Single Cell File Formats