1 #ifndef VIENNA_RNA_PACKAGE_EQUILIBRIUM_PROBS_H 2 #define VIENNA_RNA_PACKAGE_EQUILIBRIUM_PROBS_H 5 #define VRNA_BACKWARD_COMPAT 9 #ifdef DEPRECATION_WARNINGS 11 # define DEPRECATED(func) func __attribute__ ((deprecated)) 13 # define DEPRECATED(func) func 16 # define DEPRECATED(func) func double vrna_mean_bp_distance(vrna_fold_compound_t *vc)
Get the mean base pair distance in the thermodynamic ensemble.
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:39
The most basic data structure required by many functions throughout the RNAlib.
Definition: data_structures.h:424
vrna_plist_t * vrna_stack_prob(vrna_fold_compound_t *vc, double cutoff)
Compute stacking probabilities.
this datastructure is used as input parameter in functions of PS_dot.h and others ...
Definition: data_structures.h:164
double vrna_mean_bp_distance_pr(int length, FLT_OR_DBL *pr)
Get the mean base pair distance in the thermodynamic ensemble from a probability matrix.
FLT_OR_DBL * pr
A pointer to the base pair probability matrix.