RNAlib-2.2.9
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Functions dealing with file formats for Multiple Sequence Alignments (MSA) More...
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Macros | |
#define | VRNA_FILE_FORMAT_MSA_CLUSTAL 1U |
Option flag indicating ClustalW formatted files. More... | |
#define | VRNA_FILE_FORMAT_MSA_STOCKHOLM 2U |
Option flag indicating Stockholm 1.0 formatted files. More... | |
#define | VRNA_FILE_FORMAT_MSA_FASTA 4U |
Option flag indicating FASTA (Pearson) formatted files. More... | |
#define | VRNA_FILE_FORMAT_MSA_MAF 8U |
Option flag indicating MAF formatted files. More... | |
#define | VRNA_FILE_FORMAT_MSA_DEFAULT |
Option flag indicating the set of default file formats. More... | |
#define | VRNA_FILE_FORMAT_MSA_NOCHECK 4096U |
Option flag to disable validation of the alignment. More... | |
#define | VRNA_FILE_FORMAT_MSA_UNKNOWN 8192U |
Return flag of vrna_file_msa_detect_format() to indicate unknown or malformatted alignment. More... | |
Functions | |
int | vrna_file_msa_read (const char *filename, char ***names, char ***aln, char **id, char **structure, unsigned int options) |
Read a multiple sequence alignment from file. More... | |
int | vrna_file_msa_read_record (FILE *fp, char ***names, char ***aln, char **id, char **structure, unsigned int options) |
Read a multiple sequence alignment from file handle. More... | |
unsigned int | vrna_file_msa_detect_format (const char *filename, unsigned int options) |
Detect the format of a multiple sequence alignment file. More... | |
Functions dealing with file formats for Multiple Sequence Alignments (MSA)