1 #ifndef VIENNA_RNA_PACKAGE_FILE_FORMATS_MSA_H 2 #define VIENNA_RNA_PACKAGE_FILE_FORMATS_MSA_H 20 #define VRNA_FILE_FORMAT_MSA_CLUSTAL 1U 26 #define VRNA_FILE_FORMAT_MSA_STOCKHOLM 2U 32 #define VRNA_FILE_FORMAT_MSA_FASTA 4U 38 #define VRNA_FILE_FORMAT_MSA_MAF 8U 44 #define VRNA_FILE_FORMAT_MSA_DEFAULT ( \ 45 VRNA_FILE_FORMAT_MSA_CLUSTAL \ 46 | VRNA_FILE_FORMAT_MSA_STOCKHOLM \ 47 | VRNA_FILE_FORMAT_MSA_FASTA \ 48 | VRNA_FILE_FORMAT_MSA_MAF \ 55 #define VRNA_FILE_FORMAT_MSA_NOCHECK 4096U 61 #define VRNA_FILE_FORMAT_MSA_UNKNOWN 8192U 115 unsigned int options);
173 unsigned int options);
202 unsigned int options);
unsigned int vrna_file_msa_detect_format(const char *filename, unsigned int options)
Detect the format of a multiple sequence alignment file.
int vrna_file_msa_read(const char *filename, char ***names, char ***aln, char **id, char **structure, unsigned int options)
Read a multiple sequence alignment from file.
int vrna_file_msa_read_record(FILE *fp, char ***names, char ***aln, char **id, char **structure, unsigned int options)
Read a multiple sequence alignment from file handle.