RNAlib-2.2.9

Equilibrium Probability implementations. More...

+ Include dependency graph for equilibrium_probs.h:
+ This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Functions

double vrna_mean_bp_distance_pr (int length, FLT_OR_DBL *pr)
 Get the mean base pair distance in the thermodynamic ensemble from a probability matrix. More...
 
double vrna_mean_bp_distance (vrna_fold_compound_t *vc)
 Get the mean base pair distance in the thermodynamic ensemble. More...
 
vrna_plist_tvrna_stack_prob (vrna_fold_compound_t *vc, double cutoff)
 Compute stacking probabilities. More...
 

Detailed Description

Equilibrium Probability implementations.

This file includes various implementations for equilibrium probability computations based on the partition function of an RNA sequence, two concatenated sequences, or a sequence alignment.