bin/ESTmapper.pl
bin/cleanPolishes
bin/comparePolishes
bin/configureESTmapper.pl
bin/convertPolishes
bin/convertToAtac
bin/convertToExtent
bin/depthOfPolishes
bin/detectChimera
bin/existDB
bin/filterEST
bin/filterESTsimple
bin/filterMRNA
bin/filterNULL
bin/filterPolishes
bin/filtertest
bin/fixPolishesIID
bin/headPolishes
bin/hitConverter
bin/kmer-mask
bin/leaff
bin/mapMers
bin/mapMers-depth
bin/mappedCoverage
bin/mergeCounts
bin/mergePolishes
bin/meryl
bin/mt19937ar-test
bin/parseSNP
bin/pickBestPair
bin/pickBestPolish
bin/pickUniquePolish
bin/plotCoverageVsIdentity
bin/positionDB
bin/realignPolishes
bin/removeDuplicate
bin/removeRedundant
bin/reportAlignmentDifferences
bin/runConcurrently.pl
bin/seagen
bin/sim4db
bin/simple
bin/sortHits
bin/sortPolishes
bin/summarizePolishes
bin/terminate
bin/test-merStream
bin/test-seqCache
bin/test-seqStream
bin/uniqPolishes
bin/vennPolishes
include/alphabet.h
include/bigQueue.H
include/bio++.H
include/bio.h
include/bitOperations.h
include/bitPackedArray.H
include/bitPackedFile.H
include/bitPacking.h
include/eliasDeltaEncoding.h
include/eliasGammaEncoding.h
include/endianess.H
include/existDB.H
include/exon.H
include/fastaFile.H
include/fastaStdin.H
include/fastqFile.H
include/fastqStdin.H
include/fibonacciEncoding.h
include/generalizedUnaryEncoding.h
include/intervalList.H
include/kmer.H
include/kmerhuge.H
include/kmeriface.H
include/kmertiny.H
include/libmeryl.H
include/logMsg.H
include/merCovering.H
include/merList.H
include/merStream.H
include/merTable.H
include/mers.h
include/meryl.H
include/mspManager.H
include/positionDB.H
include/readBuffer.H
include/recordFile.H
include/seqCache.H
include/seqFactory.H
include/seqFile.H
include/seqStore.H
include/seqStream.H
include/sffFile.H
include/sim4.H
include/sim4defines.H
include/sim4parameters.H
include/sim4polish.H
include/sim4polishBuilder.H
include/sim4polishFile.H
include/sim4polishList.H
include/sim4polishReader.H
include/sim4polishWriter.H
include/speedCounter.H
include/splitToWords.H
include/sweatShop.H
include/uint32List.H
include/unaryEncoding.h
include/util++.H
include/util.h
lib/libbio.a
lib/libkaz.a
lib/libkmer.a
lib/libmeryl.a
lib/libmerylguts.a
lib/libmt19937ar.a
lib/libseq.a
lib/libsim4.a
lib/libutil.a
lib/scheduler.pm
lib/sim4polish.pm
