include/BamIndex.h
include/BamInterface.h
include/BaseAsciiMap.h
include/BaseComposition.h
include/BaseCount.h
include/BaseQualityHelper.h
include/BaseUtilities.h
include/BasicHash.h
include/BgzfFileType.h
include/BgzfFileTypeRecovery.h
include/CSG_MD5.h
include/CharBuffer.h
include/Chromosome.h
include/Cigar.h
include/CigarHelper.h
include/CigarRoller.h
include/Constant.h
include/Error.h
include/ErrorHandler.h
include/FastQFile.h
include/FastQStatus.h
include/FileType.h
include/FortranFormat.h
include/Generic.h
include/GenericSamInterface.h
include/GenomeSequence.h
include/GenomeSequenceHelpers.h
include/GenotypeLists.h
include/GlfException.h
include/GlfFile.h
include/GlfHeader.h
include/GlfRecord.h
include/GlfRefSection.h
include/GlfStatus.h
include/GreedyTupleAligner.h
include/GzipFileType.h
include/GzipHeader.h
include/Hash.h
include/IndexBase.h
include/InplaceMerge.h
include/Input.h
include/InputFile.h
include/IntArray.h
include/IntHash.h
include/LongHash.h
include/LongInt.h
include/LongLongCounter.h
include/MapFunction.h
include/MathConstant.h
include/MathMatrix.h
include/MathVector.h
include/MemoryAllocators.h
include/MemoryInfo.h
include/MemoryMap.h
include/MemoryMapArray.h
include/MiniDeflate.h
include/NonOverlapRegions.h
include/PackedVector.h
include/Parameters.h
include/Pedigree.h
include/PedigreeAlleleFreq.h
include/PedigreeAlleles.h
include/PedigreeDescription.h
include/PedigreeFamily.h
include/PedigreeGlobals.h
include/PedigreePerson.h
include/Performance.h
include/PhoneHome.h
include/Pileup.h
include/PileupElement.h
include/PileupElementBaseQual.h
include/PosList.h
include/QuickIndex.h
include/Random.h
include/ReferenceSequence.h
include/ReusableVector.h
include/STLUtilities.h
include/SamCoordOutput.h
include/SamFile.h
include/SamFileHeader.h
include/SamFilter.h
include/SamFlag.h
include/SamHeaderHD.h
include/SamHeaderPG.h
include/SamHeaderRG.h
include/SamHeaderRecord.h
include/SamHeaderSQ.h
include/SamHeaderTag.h
include/SamHelper.h
include/SamInterface.h
include/SamQuerySeqWithRefHelper.h
include/SamRecord.h
include/SamRecordHelper.h
include/SamRecordPool.h
include/SamReferenceInfo.h
include/SamStatistics.h
include/SamStatus.h
include/SamTags.h
include/SamValidation.h
include/SimpleStats.h
include/SmithWaterman.h
include/Sort.h
include/StatGenStatus.h
include/StringAlias.h
include/StringArray.h
include/StringBasics.h
include/StringHash.h
include/StringMap.h
include/Tabix.h
include/TrimSequence.h
include/UncompressedFileType.h
include/UnitTest.h
include/VcfFile.h
include/VcfFileReader.h
include/VcfFileWriter.h
include/VcfGenotypeField.h
include/VcfGenotypeFormat.h
include/VcfGenotypeSample.h
include/VcfHeader.h
include/VcfHelper.h
include/VcfRecord.h
include/VcfRecordDiscardRules.h
include/VcfRecordField.h
include/VcfRecordFilter.h
include/VcfRecordGenotype.h
include/VcfRecordInfo.h
include/VcfSubsetSamples.h
include/bam.h
include/bgzf.h
include/glfHandler.h
include/khash.h
include/knetfile.h
lib/libStatGen.a
