import os
from mtsv.parsing import outfile_type

include: "readprep_snek"
include: "binning_snek"
include: "summary_snek"

REPORTS = [outfile_type(
    os.path.join(
        "Reports", "{}_report.html".format(snk)))
        for snk in ['summary', 'readprep', 'binning']]

rule pipeline_all:
    input: REPORTS