bin/NRPsMatcher
bin/nerpa.py
bin/nerpa_init.py
share/nerpa/configs/aminoacids.tsv
share/nerpa/configs/modifications.tsv
share/nerpa/configs/monomers-MT-superstrict.tsv
share/nerpa/configs/monomers-bh-relaxed.tsv
share/nerpa/configs/monomers-super-relaxed.tsv
share/nerpa/configs/monomers.tsv
share/nerpa/configs/monomersLogP.tsv
share/nerpa/configs/monomersdb_nerpa.json
share/nerpa/configs/nerpa.cfg
share/nerpa/configs/prob_gen.cfg
share/nerpa/external_tools/rBAN/rBAN-1.0.jar
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/__init__.py
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/__pycache__/__init__.cpython-39.pyc
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/__pycache__/codes_handler.cpython-39.pyc
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/__pycache__/config.cpython-39.pyc
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/__pycache__/json_handler.cpython-39.pyc
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/__pycache__/log_utils.cpython-39.pyc
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/__pycache__/main.cpython-39.pyc
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/codes/NOTES.txt
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/codes/aaSMILES.txt
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/codes/nrpspredictor2_knowncodes.fasta
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/codes/nrpspredictor2_labeled_sigs.txt
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/codes/sandpuma_mibig_based.fna
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/codes_handler.py
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/config.py
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/json_handler.py
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/log_utils.py
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/main.py
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/tests/__pycache__/test_features_txt.cpython-39.pyc
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/tests/__pycache__/test_nrpspkspredictions_txt.cpython-39.pyc
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/tests/test_features_txt.py
share/nerpa/nerpa_pipeline/NRPSPredictor_utils/tests/test_nrpspkspredictions_txt.py
share/nerpa/nerpa_pipeline/__pycache__/handle_E.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/handle_MT.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/handle_PCP2.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/handle_helper.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/handle_monomers.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/handle_rban.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/logger.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/nerpa_config.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/nerpa_utils.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/predictions_preprocessor.cpython-39.pyc
share/nerpa/nerpa_pipeline/__pycache__/splitter.cpython-39.pyc
share/nerpa/nerpa_pipeline/handle_E.py
share/nerpa/nerpa_pipeline/handle_MT.py
share/nerpa/nerpa_pipeline/handle_PCP2.py
share/nerpa/nerpa_pipeline/handle_helper.py
share/nerpa/nerpa_pipeline/handle_monomers.py
share/nerpa/nerpa_pipeline/handle_rban.py
share/nerpa/nerpa_pipeline/logger.py
share/nerpa/nerpa_pipeline/nerpa_config.py
share/nerpa/nerpa_pipeline/nerpa_utils.py
share/nerpa/nerpa_pipeline/predictions_preprocessor.py
share/nerpa/nerpa_pipeline/splitter.py
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/nrpspks_predictions_txt/ctg1_minowa_nrpspredoutput.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/nrpspks_predictions_txt/ctg1_nrpspredictor2_codes.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/nrpspks_predictions_txt/ctg1_nrpspredictor2_svm.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/nrpspks_predictions_txt/ctg1_nrpsseqs.fasta
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/txt/BGC0000310_BGC.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/txt/BGC0000310_NRPS_PKS.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/txt/BGC0000310_RiPP.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/txt/BGC0000310_gene.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/txt/BGC0000310_genome.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/txt/BGC0000310_signature_gene_info.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000310/txt/BGC0000310_smCOG.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/nrpspks_predictions_txt/ctg1_minowa_nrpspredoutput.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/nrpspks_predictions_txt/ctg1_nrpspredictor2_codes.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/nrpspks_predictions_txt/ctg1_nrpspredictor2_svm.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/nrpspks_predictions_txt/ctg1_nrpsseqs.fasta
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/txt/BGC0000425_BGC.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/txt/BGC0000425_NRPS_PKS.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/txt/BGC0000425_RiPP.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/txt/BGC0000425_gene.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/txt/BGC0000425_genome.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/txt/BGC0000425_signature_gene_info.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000425/txt/BGC0000425_smCOG.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/nrpspks_predictions_txt/ctg1_minowa_nrpspredoutput.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/nrpspks_predictions_txt/ctg1_nrpspredictor2_codes.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/nrpspks_predictions_txt/ctg1_nrpspredictor2_svm.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/nrpspks_predictions_txt/ctg1_nrpsseqs.fasta
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/txt/BGC0000438_BGC.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/txt/BGC0000438_NRPS_PKS.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/txt/BGC0000438_RiPP.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/txt/BGC0000438_gene.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/txt/BGC0000438_genome.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/txt/BGC0000438_signature_gene_info.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000438/txt/BGC0000438_smCOG.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/nrpspks_predictions_txt/ctg1_minowa_nrpspredoutput.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/nrpspks_predictions_txt/ctg1_nrpspredictor2_codes.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/nrpspks_predictions_txt/ctg1_nrpspredictor2_svm.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/nrpspks_predictions_txt/ctg1_nrpsseqs.fasta
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/txt/BGC0000447_BGC.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/txt/BGC0000447_NRPS_PKS.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/txt/BGC0000447_RiPP.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/txt/BGC0000447_gene.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/txt/BGC0000447_genome.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/txt/BGC0000447_signature_gene_info.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0000447/txt/BGC0000447_smCOG.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/nrpspks_predictions_txt/ctg1_minowa_nrpspredoutput.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/nrpspks_predictions_txt/ctg1_nrpspredictor2_codes.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/nrpspks_predictions_txt/ctg1_nrpspredictor2_svm.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/nrpspks_predictions_txt/ctg1_nrpsseqs.fasta
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/txt/BGC0001207_BGC.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/txt/BGC0001207_NRPS_PKS.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/txt/BGC0001207_RiPP.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/txt/BGC0001207_gene.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/txt/BGC0001207_genome.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/txt/BGC0001207_signature_gene_info.txt
share/nerpa/test_data/MIBiG_subset/genome_predictions/BGC0001207/txt/BGC0001207_smCOG.txt
share/nerpa/test_data/MIBiG_subset/structures_info.tsv
