# FILE CONTENT FORMAT:
# # Has mark optional Comments, as many lines as needed
# # ...
# Extension: 4 letters (not used as only 1 file is now in index)
# MAX_LEN_NO_PATTERN : integer (supposed to be short, around 24)
# isSymmetric : 0=no, 1=yes
# guideLen : size of the guide in nucleotides, integer. All guideLen-combinations are expected
# # Optional Comments, as many lines as needed
# # ...
# tuple isGuider ntadvance comment
# ...
# 	tuple = DNA sequence of the exact length <guideLen>
# 	isGuider = 0 or 1, 1=Guider, 0=no guider. 
# 	If guider, first advance nt then take key.
# 	ntadvance = nucleotides to advance in the sequence when observing the tuple.
# 		    the minimum advance is 1.
# 	comment is any text until end of line (max 900 chars).
#
# Next lines start with extension, maxlennopatrn, issym, guidelen
XYXt
24
1
3
# Next lines start tuples and guiders
#Tuple	isGuider	NT_to_advance	Comment
AAA	0	1	x
AAC	0	1	x
AAG	0	1	x
AAT	0	1	x
ACA	1	3	Index
ACC	0	1	x
ACG	0	1	x
ACT	0	1	x
AGA	1	3	Index
AGC	0	1	x
AGG	0	1	x
AGT	0	1	x
ATA	1	3	Index
ATC	0	1	x
ATG	0	1	x
ATT	0	1	x
CAA	0	1	x
CAC	1	3	Index
CAG	0	1	x
CAT	0	1	x
CCA	0	1	x
CCC	0	1	x
CCG	0	1	x
CCT	0	1	x
CGA	0	1	x
CGC	1	3	Index
CGG	0	1	x
CGT	0	1	x
CTA	0	1	x
CTC	1	3	Index
CTG	0	1	x
CTT	0	1	x
GAA	0	1	x
GAC	0	1	x
GAG	1	3	Index
GAT	0	1	x
GCA	0	1	x
GCC	0	1	x
GCG	1	3	Index
GCT	0	1	x
GGA	0	1	x
GGC	0	1	x
GGG	0	1	x
GGT	0	1	x
GTA	0	1	x
GTC	0	1	x
GTG	1	3	Index
GTT	0	1	x
TAA	0	1	x
TAC	0	1	x
TAG	0	1	x
TAT	1	3	Index
TCA	0	1	x
TCC	0	1	x
TCG	0	1	x
TCT	1	3	Index
TGA	0	1	x
TGC	0	1	x
TGG	0	1	x
TGT	1	3	Index
TTA	0	1	x
TTC	0	1	x
TTG	0	1	x
TTT	0	1	x
