bin/collect-read-length-orf-profiles
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bin/create-base-genome-profile
bin/create-orf-profiles
bin/create-read-length-orf-profiles
bin/estimate-metagene-profile-bayes-factors
bin/estimate-orf-bayes-factors
bin/extract-metagene-profiles
bin/extract-orf-coordinates
bin/extract-orf-profiles
bin/filter-nonunique-peptide-matches
bin/get-all-read-filtering-counts
bin/get-orf-peptide-matches
bin/label-orfs
bin/merge-replicate-orf-profiles
bin/predict-translated-orfs
bin/prepare-rpbp-genome
bin/rpbp-predictions-dashboard
bin/rpbp-profile-construction-dashboard
bin/run-all-rpbp-instances
bin/run-rpbp-pipeline
bin/select-final-prediction-set
bin/select-periodic-offsets
bin/summarize-rpbp-predictions
bin/summarize-rpbp-profile-construction
bin/visualize-metagene-profile-bayes-factor
bin/visualize-orf-type-metagene-profiles
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