# Rhinovirus genotyping

## Documentation for package ‘rhinotypeR’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

rhinotypeR-package | rhinotypeR: A Package for the genotyping of rhinoviruses using the VP4/2 region
assignTypes | Assigns genotypes to input sequences
countSNPs | Counts single nucleotide polymorphisms
getPrototypeSeqs | Download rhinovirus prototype strains
overallMeanDistance | Estimates the overall mean distance
pairwiseDistances | Estimates pairwise distances
plotAA | Visualize amino acid substitutions
plotDistances | Visualizes pairwise genetic distances
plotFrequency | Plots the frequency of assigned genotypes
plotTree | Plots a simple phylogenetic tree
rhinotypeR | rhinotypeR: A Package for the genotyping of rhinoviruses using the VP4/2 region
SNPeek | Visualize single nucleotide polymorphisms