class VepArgs extends cannoli.VepArgs with ADAMSaveAnyArgs with ParquetArgs

Vep command line arguments.

Linear Supertypes
ParquetArgs, ADAMSaveAnyArgs, SaveArgs, ParquetRDDArgs, cannoli.VepArgs, Args4jBase, AnyRef, Any
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  2. By Inheritance
Inherited
  1. VepArgs
  2. ParquetArgs
  3. ADAMSaveAnyArgs
  4. SaveArgs
  5. ParquetRDDArgs
  6. VepArgs
  7. Args4jBase
  8. AnyRef
  9. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new VepArgs()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. var addFiles: Boolean
    Definition Classes
    VepArgs
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. var asSingleFile: Boolean
    Definition Classes
    VepArgs → ADAMSaveAnyArgs
  7. var assembly: String
    Definition Classes
    VepArgs
  8. val blockSize: Int
    Definition Classes
    ParquetArgs → ParquetRDDArgs
    Annotations
    @Option()
  9. var cachePath: String
    Definition Classes
    VepArgs
  10. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  11. val compressionCodec: CompressionCodecName
    Definition Classes
    ParquetArgs → ParquetRDDArgs
    Annotations
    @Option()
  12. var deferMerging: Boolean
    Definition Classes
    VepArgs → ADAMSaveAnyArgs
  13. val disableDictionaryEncoding: Boolean
    Definition Classes
    ParquetArgs → ParquetRDDArgs
    Annotations
    @Option()
  14. var disableFastConcat: Boolean
    Definition Classes
    VepArgs → ADAMSaveAnyArgs
  15. var doPrintUsage: Boolean
    Definition Classes
    Args4jBase
  16. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  17. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  18. var executable: String
    Definition Classes
    VepArgs
  19. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  20. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  21. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  22. var image: String
    Definition Classes
    VepArgs
  23. var inputPath: String
  24. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  25. val logLevel: String
    Definition Classes
    ParquetArgs
    Annotations
    @Option()
  26. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  27. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  28. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  29. var outputPath: String
    Definition Classes
    VepArgs → SaveArgs
  30. val pageSize: Int
    Definition Classes
    ParquetArgs → ParquetRDDArgs
    Annotations
    @Option()
  31. var sortFastqOutput: Boolean
    Definition Classes
    VepArgs → ADAMSaveAnyArgs
  32. var species: String
    Definition Classes
    VepArgs
  33. var stringency: String
  34. var sudo: Boolean
    Definition Classes
    VepArgs
  35. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  36. def toString(): String
    Definition Classes
    AnyRef → Any
  37. var useDocker: Boolean
    Definition Classes
    VepArgs
  38. var useSingularity: Boolean
    Definition Classes
    VepArgs
  39. var vepArgs: String
    Definition Classes
    VepArgs
  40. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  41. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  42. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from ParquetArgs

Inherited from ADAMSaveAnyArgs

Inherited from SaveArgs

Inherited from ParquetRDDArgs

Inherited from cannoli.VepArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped