c

org.bdgenomics.cannoli

MagicBlastArgs

class MagicBlastArgs extends Args4jBase

Magic-BLAST function arguments.

Linear Supertypes
Args4jBase, AnyRef, Any
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Inherited
  1. MagicBlastArgs
  2. Args4jBase
  3. AnyRef
  4. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new MagicBlastArgs()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. var addFiles: Boolean
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  7. var db: String
  8. var doPrintUsage: Boolean
    Definition Classes
    Args4jBase
  9. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  10. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  11. var executable: String
  12. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  13. var gapExtend: Integer
  14. var gapOpen: Integer
  15. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  16. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  17. var image: String
  18. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  19. var maxEditDistance: Integer
  20. var maxIntronLength: Integer
  21. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  22. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  23. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  24. var penalty: Integer
  25. var percentIdentity: Double
  26. var score: String
  27. var stringency: String
  28. var sudo: Boolean
  29. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  30. def toString(): String
    Definition Classes
    AnyRef → Any
  31. var transcriptome: Boolean
  32. var useDocker: Boolean
  33. var useSingularity: Boolean
  34. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  35. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  36. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  37. var wordSize: Integer

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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