class Freebayes extends CannoliFn[AlignmentDataset, VariantContextDataset]
Freebayes wrapper as a function AlignmentDataset → VariantContextDataset, for use in cannoli-shell or notebooks.
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new
Freebayes(args: FreebayesArgs, stringency: ValidationStringency = ValidationStringency.LENIENT, sc: SparkContext)
- args
Freebayes function arguments.
- stringency
Validation stringency. Defaults to ValidationStringency.LENIENT.
- sc
Spark context.
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def
andThen[A](g: (VariantContextDataset) ⇒ A): (AlignmentDataset) ⇒ A
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def
apply(alignments: AlignmentDataset): VariantContextDataset
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- val args: FreebayesArgs
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def
compose[A](g: (A) ⇒ AlignmentDataset): (A) ⇒ VariantContextDataset
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sc: SparkContext
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