c

org.bdgenomics.cannoli

FreebayesArgs

class FreebayesArgs extends Args4jBase

Freebayes function arguments.

Linear Supertypes
Args4jBase, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. FreebayesArgs
  2. Args4jBase
  3. AnyRef
  4. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new FreebayesArgs()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. var addFiles: Boolean
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  7. var doPrintUsage: Boolean
    Definition Classes
    Args4jBase
  8. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  9. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  10. var executable: String
  11. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. var freebayesArgs: String
  13. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  14. var gvcf: Boolean
  15. var gvcfChunk: Int
  16. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  17. var image: String
  18. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  19. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  20. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  21. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  22. var referencePath: String
  23. var sudo: Boolean
  24. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  25. def toString(): String
    Definition Classes
    AnyRef → Any
  26. var useDocker: Boolean
  27. var useSingularity: Boolean
  28. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  29. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  30. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped