bin/.fusioncatcher-post-link.sh
bin/FC
bin/add_ambiguous_counts.py
bin/add_custom_gene.py
bin/add_gap_gene.py
bin/analyze_bowtie2.py
bin/analyze_exon-exon_mappings.py
bin/analyze_splits_sam.py
bin/analyze_star_chimeric.py
bin/biopython_version.py
bin/blat-filter-fusion.py
bin/blat-filter-fusion.sh
bin/blat_parallel.py
bin/bootstrap.py
bin/build_ig.py
bin/build_report_fusions_map.py
bin/build_report_fusions_psl.py
bin/build_report_fusions_psl2.py
bin/build_summary.py
bin/clean_bed.py
bin/clip_quality.py
bin/compress-reads-ids.py
bin/concatenate.py
bin/configuration.py
bin/convert_pairs_symbols.py
bin/download-human-db.sh
bin/droppe.py
bin/enlarge_genes.py
bin/extract_fusion_genes.py
bin/extract_reads_ids.py
bin/extract_short_reads.py
bin/extract_transcripts.py
bin/fasta2reads.py
bin/fastq2fasta.py
bin/fastq_b2n.py
bin/fastqcount.sh
bin/fc2vcf.py
bin/filter-wiggle.py
bin/filter_fusion_sequences.py
bin/filter_map_pre-splitting.py
bin/filter_pairs.py
bin/filter_splits.py
bin/find_fusion_genes_map.py
bin/find_fusion_genes_psl.py
bin/find_fusion_genes_psl2.py
bin/find_homolog_genes.py
bin/fix.py
bin/fragment_fastq.py
bin/fragments_fusion_genes.py
bin/fusioncatcher
bin/fusioncatcher-batch
bin/fusioncatcher-batch.py
bin/fusioncatcher-build
bin/fusioncatcher-build.py
bin/fusioncatcher.py
bin/generate_1000genomes.py
bin/generate_18cancers.py
bin/generate_adjacent_genes.py
bin/generate_banned.py
bin/generate_banned_seq.py
bin/generate_bodymap2.py
bin/generate_ccle3.py
bin/generate_chrom_lens.py
bin/generate_cortex.py
bin/generate_enlarge.py
bin/generate_exon-exon_junctions.py
bin/generate_exons.py
bin/generate_gene-gene_junctions.py
bin/generate_genes.py
bin/generate_genes_symbols.py
bin/generate_genes_with_no_proteins.py
bin/generate_gliomas.py
bin/generate_healthy.py
bin/generate_hpa.py
bin/generate_known.py
bin/generate_labels_descriptions.py
bin/generate_metastasis.py
bin/generate_nontumor.py
bin/generate_oesophagus.py
bin/generate_overlapping_genes.py
bin/generate_pairs_pseudogenes.py
bin/generate_rrna_unit.py
bin/generate_tcga.py
bin/generate_tcga3.py
bin/generate_transcripts.py
bin/generate_tumor-genes.py
bin/get_biotypes.py
bin/get_cacg.py
bin/get_cancer-genes.py
bin/get_ccle.py
bin/get_ccle2.py
bin/get_celllines.py
bin/get_cgp.py
bin/get_chimerdb2.py
bin/get_chimerdb3.py
bin/get_chimerdb4.py
bin/get_civic.py
bin/get_conjoing.py
bin/get_cosmic.py
bin/get_dgd.py
bin/get_exons_positions.py
bin/get_gencode.py
bin/get_genes_descriptions.py
bin/get_genes_symbols.py
bin/get_genome.py
bin/get_gtex.py
bin/get_gtf.py
bin/get_hla.py
bin/get_hla2.py
bin/get_mitelman.py
bin/get_mtrna.py
bin/get_noncancer.py
bin/get_oncogenes.py
bin/get_oncokb.py
bin/get_pancreases.py
bin/get_paralogs.py
bin/get_pcawg.py
bin/get_phix174.py
bin/get_prostate_cancer.py
bin/get_prostates.py
bin/get_refseq.py
bin/get_refseq_ensembl.py
bin/get_rrna.py
bin/get_rtcircrna.py
bin/get_synonyms.py
bin/get_tcga.py
bin/get_tcga2.py
bin/get_ticdb.py
bin/get_trna.py
bin/get_ucsc.py
bin/get_viruses.py
bin/inspect_fusion_sequences.py
bin/interleave.sh
bin/join_homolog_genes.py
bin/label_ambiguous_fusion_genes.py
bin/label_exonexon.py
bin/label_found_fusions.py
bin/label_fusion_genes.py
bin/label_fusion_genes_trim2.py
bin/label_fusion_genes_znf.py
bin/label_multi.py
bin/label_rtcircrna.py
bin/lengths_reads.py
bin/liftover.py
bin/merge-reads.py
bin/merge-sam.py
bin/merge_reports.py
bin/overlap.py
bin/padding-fastq.py
bin/pair8removal.py
bin/phred.py
bin/predict_frame.py
bin/prep-1by1.py
bin/psl_best_unique_contigs.py
bin/python.sh
bin/python_version.py
bin/reads_from_map.py
bin/remove-adapter.py
bin/remove-bad-illumina.py
bin/remove_adapter.py
bin/remove_custom_feature.py
bin/remove_reads_exon_exon_fastq.py
bin/remove_reads_exon_exon_map.py
bin/remove_reads_exon_exon_psl.py
bin/remove_reads_genome_transcriptome.py
bin/remove_shorter_reads.py
bin/remove_str.py
bin/sam2psl.py
bin/seqtk-subseq.sh
bin/shebang.py
bin/shield_genes.py
bin/shuffle.py
bin/sliding-read.py
bin/smoothing_fusions_psl.py
bin/solexa18to15.py
bin/sort_ttdb.py
bin/split-fasta.py
bin/split-reads.py
bin/split_reads.py
bin/sra2illumina.py
bin/symbols.py
bin/trim_poly_tails.py
bin/trim_reads.py
bin/unshuffle.py
bin/update-config.py
bin/workflow.py
doc/manual.md
etc/conda/activate.d/fusioncatcher.sh
etc/conda/deactivate.d/fusioncatcher.sh
etc/configuration.cfg
share/fusioncatcher-1.33b/db/.empty
