#!/usr/bin/env python
# coding: utf-8

import logging
import sys
from Bio.SeqRecord import SeqRecord
from pandas import DataFrame
from .canvas_generator import CircularCanvasConfigurator
from .circular_object_groups import LegendGroup, GcContentGroup, GcSkewGroup, SeqRecordGroup, DefinitionGroup, TickGroup, AxisGroup
from .object_configurators import GcSkewConfigurator, GcContentConfigurator, FeatureDrawingConfigurator
from .file_processing import save_figure
from .data_processing import prepare_legend_table
from .utility_functions import check_feature_presence, calculate_coordinates
from svgwrite import Drawing
from svgwrite.container import Group
from svgwrite.path import Path
# Logging setup
logger = logging.getLogger()
handler = logging.StreamHandler(sys.stdout)



def center_group_on_canvas(group: Group, canvas_config: CircularCanvasConfigurator) -> Group:
    """
    Centers a given SVG group on the canvas based on the canvas configuration.

    Parameters:
    group (Group): The SVG group to be centered.
    canvas_config (CircularCanvasConfigurator): The configuration of the circular canvas.

    Returns:
    Group: The centered SVG group.
    """
    group.translate(canvas_config.offset_x, canvas_config.offset_y)
    return group
def place_legend_on_canvas(group: Group, canvas_config: CircularCanvasConfigurator):
    
    group.translate(canvas_config.legend_offset_x, canvas_config.legend_offset_y)
    return group

def add_gc_skew_group_on_canvas(canvas: Drawing, gb_record: SeqRecord, gc_df: DataFrame, canvas_config: CircularCanvasConfigurator, skew_config: GcSkewConfigurator, config_dict: dict) -> Drawing:
    """
    Adds the GC skew group to the canvas.

    Parameters:
    canvas (Drawing): The SVG drawing canvas.
    gb_record (SeqRecord): The GenBank record.
    gc_df (DataFrame): DataFrame containing GC content and skew information.
    canvas_config (CircularCanvasConfigurator): Configuration for the circular canvas.
    config_dict (dict): Configuration dictionary for drawing parameters.

    Returns:
    Drawing: The updated SVG drawing with the GC skew group added.
    """
    gc_skew_group: Group = GcSkewGroup(gb_record, gc_df, canvas_config.radius, canvas_config.track_width, skew_config, config_dict, canvas_config.track_ids['skew_track']).get_group()
    gc_skew_group = center_group_on_canvas(gc_skew_group, canvas_config)
    canvas.add(gc_skew_group)
    return canvas


def add_gc_content_group_on_canvas(canvas: Drawing, gb_record: SeqRecord, gc_df: DataFrame, canvas_config: CircularCanvasConfigurator, gc_config: GcContentConfigurator, config_dict: dict) -> Drawing:
    """
    Adds the GC content group to the canvas.

    Parameters:
    canvas (Drawing): The SVG drawing canvas.
    gb_record (SeqRecord): The GenBank record.
    gc_df (DataFrame): DataFrame containing GC content and skew information.
    canvas_config (CircularCanvasConfigurator): Configuration for the circular canvas.
    gc_config (GcContentConfigurator): Configuration for the GC content representation.
    config_dict (dict): Configuration dictionary for drawing parameters.

    Returns:
    Drawing: The updated SVG drawing with the GC content group added.
    """
    gc_content_group: Group = GcContentGroup(gb_record, gc_df, canvas_config.radius, canvas_config.track_width,
                                             gc_config, config_dict, canvas_config.track_ids['gc_track']).get_group()
    gc_content_group = center_group_on_canvas(gc_content_group, canvas_config)
    canvas.add(gc_content_group)
    return canvas


def add_record_definition_group_on_canvas(canvas: Drawing, gb_record: SeqRecord, canvas_config: CircularCanvasConfigurator, species: str, strain: str, config_dict: dict) -> Drawing:
    """
    Adds the record definition group to the canvas.

    Parameters:
    canvas (Drawing): The SVG drawing canvas.
    gb_record (SeqRecord): The GenBank record.
    canvas_config (CircularCanvasConfigurator): Configuration for the circular canvas.
    species (str): Species name.
    strain (str): Strain name.
    config_dict (dict): Configuration dictionary for drawing parameters.

    Returns:
    Drawing: The updated SVG drawing with the record definition group added.
    """
    definition_group: Group = DefinitionGroup(
        gb_record, canvas_config, species=species, strain=strain, config_dict=config_dict).get_group()
    definition_group = center_group_on_canvas(definition_group, canvas_config)
    canvas.add(definition_group)
    return canvas


def add_record_group_on_canvas(canvas: Drawing, record: SeqRecord, canvas_config: CircularCanvasConfigurator, feature_config: FeatureDrawingConfigurator, config_dict: dict) -> Drawing:
    """
    Adds the record group to the canvas.

    Parameters:
    canvas (Drawing): The SVG drawing canvas.
    record (SeqRecord): The GenBank record.
    canvas_config (CircularCanvasConfigurator): Configuration for the circular canvas.
    feature_config (FeatureDrawingConfigurator): Configuration for feature drawing.
    config_dict (dict): Configuration dictionary for drawing parameters.

    Returns:
    Drawing: The updated SVG drawing with the record group added.
    """
    # Unpack parameters
    record_group: Group = SeqRecordGroup(
        gb_record=record, canvas_config=canvas_config, feature_config=feature_config, config_dict=config_dict).get_group()
    # Calculate start and end points for the 60-degree arc
    
    record_group = center_group_on_canvas(record_group, canvas_config)
    canvas.add(record_group)

    return canvas


def add_axis_group_on_canvas(canvas: Drawing, canvas_config: CircularCanvasConfigurator, config_dict: dict) -> Drawing:
    """
    Adds the axis group to the canvas.

    Parameters:
    canvas (Drawing): The SVG drawing canvas.
    canvas_config (CircularCanvasConfigurator): Configuration for the circular canvas.
    config_dict (dict): Configuration dictionary for drawing parameters.

    Returns:
    Drawing: The updated SVG drawing with the axis group added.
    """
    axis_group: Group = AxisGroup(
        canvas_config.radius, config_dict).get_group()
    axis_group = center_group_on_canvas(axis_group, canvas_config)
    canvas.add(axis_group)
    return canvas


def add_tick_group_on_canvas(canvas: Drawing, gb_record: SeqRecord, canvas_config: CircularCanvasConfigurator, config_dict: dict) -> Drawing:
    """
    Adds the tick group to the canvas.

    Parameters:
    canvas (Drawing): The SVG drawing canvas.
    gb_record (SeqRecord): The GenBank record.
    canvas_config (CircularCanvasConfigurator): Configuration for the circular canvas.
    config_dict (dict): Configuration dictionary for drawing parameters.

    Returns:
    Drawing: The updated SVG drawing with the tick group added.
    """
    tick_group: Group = TickGroup(
        gb_record, canvas_config, config_dict).get_group()
    tick_group = center_group_on_canvas(tick_group, canvas_config)
    canvas.add(tick_group)
    return canvas

def add_legend_group_on_canvas(canvas: Drawing, canvas_config: CircularCanvasConfigurator, legend_config, legend_table):
    legend_group = LegendGroup(canvas_config, legend_config, legend_table).get_group()    
    legend_group = place_legend_on_canvas(legend_group, canvas_config)
    canvas.add(legend_group)

    return canvas

def add_record_on_circular_canvas(canvas: Drawing, gb_record: SeqRecord, canvas_config: CircularCanvasConfigurator, feature_config: FeatureDrawingConfigurator, gc_config: GcContentConfigurator, skew_config: GcSkewConfigurator, gc_df: DataFrame, species: str, strain: str, config_dict: dict, legend_config, legend_table) -> Drawing:
    """
    Adds various record-related groups to a circular canvas.

    Parameters:
    canvas (Drawing): The SVG drawing canvas.
    gb_record (SeqRecord): The GenBank record.
    canvas_config (CircularCanvasConfigurator): Configuration for the circular canvas.
    feature_config (FeatureDrawingConfigurator): Configuration for feature drawing.
    gc_config (GcContentConfigurator): Configuration for GC content representation.
    gc_df (DataFrame): DataFrame containing GC content and skew information.
    species (str): Species name.
    strain (str): Strain name.
    config_dict (dict): Configuration dictionary for drawing parameters.

    Returns:
    Drawing: The updated SVG drawing with all record-related groups added.
    """
    
    canvas = add_axis_group_on_canvas(canvas, canvas_config, config_dict)
    # Add record group
    canvas = add_record_group_on_canvas(
        canvas, gb_record, canvas_config, feature_config, config_dict)
    # Add record definition group
    canvas = add_record_definition_group_on_canvas(
        canvas, gb_record, canvas_config, species, strain, config_dict)
    # Add record tick group
    canvas = add_tick_group_on_canvas(
        canvas, gb_record, canvas_config, config_dict)
    canvas = add_legend_group_on_canvas(
        canvas, canvas_config, legend_config, legend_table)
    # Add GC content group if configured to show
    if canvas_config.show_gc:
        canvas = add_gc_content_group_on_canvas(
            canvas, gb_record, gc_df, canvas_config, gc_config, config_dict)
    if canvas_config.show_skew:
        canvas = add_gc_skew_group_on_canvas(
            canvas, gb_record, gc_df, canvas_config, skew_config, config_dict)
    return canvas


def plot_circular_diagram(gb_record: SeqRecord, canvas_config: CircularCanvasConfigurator, gc_df: DataFrame, gc_config: GcContentConfigurator, skew_config: GcSkewConfigurator, feature_config: FeatureDrawingConfigurator, species: str, strain: str, config_dict: dict, out_formats: list, legend_config) -> None:
    """
    Plots a circular diagram for a GenBank record.

    Parameters:
    gb_record (SeqRecord): The GenBank record to plot.
    canvas_config (CircularCanvasConfigurator): Configuration for the circular canvas.
    gc_df (DataFrame): DataFrame containing GC content and skew information.
    gc_config (GcContentConfigurator): Configuration for GC content representation.
    feature_config (FeatureDrawingConfigurator): Configuration for feature drawing.
    species (str): Species name.
    strain (str): Strain name.
    config_dict (dict): Configuration dictionary for drawing parameters.
    out_formats (list): List of formats to save the output (e.g., ['png', 'svg']).

    Returns:
    None: The function saves the plotted diagram to specified output formats.
    """
    # Configure and create canvas
    
    features_present = check_feature_presence(gb_record, feature_config.selected_features_set)
    legend_table = prepare_legend_table(gc_config, skew_config, feature_config, features_present)
    legend_config = legend_config.recalculate_legend_dimensions(legend_table)
    canvas_config.recalculate_canvas_dimensions(legend_config)
    canvas: Drawing = canvas_config.create_svg_canvas()
    canvas = add_record_on_circular_canvas(
        canvas, gb_record, canvas_config, feature_config, gc_config, skew_config, gc_df, species, strain, config_dict, legend_config, legend_table)
    save_figure(canvas, out_formats)
