python-scripts/amplicon_study_summary_generator
python-scripts/amr_integrator
python-scripts/antismash_gff_builder
python-scripts/assembly_study_summary_generator
python-scripts/convert_cmscan_to_cmsearch_tblout
python-scripts/dwc_summary_generator
python-scripts/genomes_extract_bacterial_rrnas_as_tsv
python-scripts/genomes_extract_rrnas_as_fasta
python-scripts/genomes_extract_trnas
python-scripts/gff_toolkit
python-scripts/krona_txt_from_cat_classification
python-scripts/markergene_study_summary
python-scripts/permute_primers
python-scripts/process_dbcan_cazys
python-scripts/process_dbcan_clusters
python-scripts/rawreads_study_summary_generator
python-scripts/summarise_antismash_bgcs
python-scripts/summarise_sanntis_bgcs
python-scripts/webin_cli_handler
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/INSTALLER
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/METADATA
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/RECORD
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/REQUESTED
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/WHEEL
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/direct_url.json
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/entry_points.txt
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/licenses/LICENSE
site-packages/mgnify_pipelines_toolkit-1.4.9.dist-info/top_level.txt
site-packages/mgnify_pipelines_toolkit/__init__.py
site-packages/mgnify_pipelines_toolkit/analysis/__init__.py
site-packages/mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py
site-packages/mgnify_pipelines_toolkit/analysis/amplicon/make_asv_count_table.py
site-packages/mgnify_pipelines_toolkit/analysis/amplicon/mapseq_to_asv_table.py
site-packages/mgnify_pipelines_toolkit/analysis/amplicon/permute_primers.py
site-packages/mgnify_pipelines_toolkit/analysis/amplicon/primer_val_classification.py
site-packages/mgnify_pipelines_toolkit/analysis/amplicon/remove_ambiguous_reads.py
site-packages/mgnify_pipelines_toolkit/analysis/amplicon/rev_comp_se_primers.py
site-packages/mgnify_pipelines_toolkit/analysis/amplicon/study_summary_generator.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/add_rhea_chebi_annotation.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/antismash_gff_builder.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/combined_gene_caller_merge.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/generate_gaf.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/gff_annotation_utils.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/gff_file_utils.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/gff_toolkit.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/go_utils.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/krona_txt_from_cat_classification.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/process_dbcan_result_cazys.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/process_dbcan_result_clusters.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/study_summary_generator.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/summarise_antismash_bgcs.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/summarise_goslims.py
site-packages/mgnify_pipelines_toolkit/analysis/assembly/summarise_sanntis_bgcs.py
site-packages/mgnify_pipelines_toolkit/analysis/genomes/__init__.py
site-packages/mgnify_pipelines_toolkit/analysis/rawreads/study_summary_generator.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/__init__.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/amrintegrator.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/convert_cmscan_to_cmsearch_tblout.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/dwc_summary_generator.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/fastq_suffix_header_check.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/get_subunits.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/get_subunits_coords.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/library_strategy_check.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/mapseq2biom.py
site-packages/mgnify_pipelines_toolkit/analysis/shared/markergene_study_summary.py
site-packages/mgnify_pipelines_toolkit/constants/db_labels.py
site-packages/mgnify_pipelines_toolkit/constants/ncrna.py
site-packages/mgnify_pipelines_toolkit/constants/regex_fasta_header.py
site-packages/mgnify_pipelines_toolkit/constants/tax_ranks.py
site-packages/mgnify_pipelines_toolkit/constants/thresholds.py
site-packages/mgnify_pipelines_toolkit/constants/var_region_coordinates.py
site-packages/mgnify_pipelines_toolkit/ena/__init__.py
site-packages/mgnify_pipelines_toolkit/ena/webin_cli_handler.py
site-packages/mgnify_pipelines_toolkit/schemas/dataframes.py
site-packages/mgnify_pipelines_toolkit/utils/__init__.py
site-packages/mgnify_pipelines_toolkit/utils/fasta_to_delimited.py
site-packages/mgnify_pipelines_toolkit/utils/get_mpt_version.py
