[console_scripts]
add_rhea_chebi_annotation = mgnify_pipelines_toolkit.analysis.assembly.add_rhea_chebi_annotation:main
amplicon_study_summary_generator = mgnify_pipelines_toolkit.analysis.amplicon.study_summary_generator:cli
amr_integrator = mgnify_pipelines_toolkit.analysis.shared.amrintegrator:main
antismash_gff_builder = mgnify_pipelines_toolkit.analysis.assembly.antismash_gff_builder:main
assembly_study_summary_generator = mgnify_pipelines_toolkit.analysis.assembly.study_summary_generator:cli
classify_var_regions = mgnify_pipelines_toolkit.analysis.amplicon.classify_var_regions:main
combined_gene_caller_merge = mgnify_pipelines_toolkit.analysis.assembly.combined_gene_caller_merge:main
convert_cmscan_to_cmsearch_tblout = mgnify_pipelines_toolkit.analysis.shared.convert_cmscan_to_cmsearch_tblout:main
dwc_summary_generator = mgnify_pipelines_toolkit.analysis.shared.dwc_summary_generator:cli
fasta_to_delimited = mgnify_pipelines_toolkit.utils.fasta_to_delimited:main
fastq_suffix_header_check = mgnify_pipelines_toolkit.analysis.shared.fastq_suffix_header_check:main
generate_gaf = mgnify_pipelines_toolkit.analysis.assembly.generate_gaf:main
genomes_extract_bacterial_rrnas_as_tsv = mgnify_pipelines_toolkit.analysis.genomes.rna.extract_bacterial_rrnas_as_tsv:main
genomes_extract_rrnas_as_fasta = mgnify_pipelines_toolkit.analysis.genomes.rna.extract_rrnas_as_fasta:main
genomes_extract_trnas = mgnify_pipelines_toolkit.analysis.genomes.rna.extract_trnas:main
get_mpt_version = mgnify_pipelines_toolkit.utils.get_mpt_version:main
get_subunits = mgnify_pipelines_toolkit.analysis.shared.get_subunits:main
get_subunits_coords = mgnify_pipelines_toolkit.analysis.shared.get_subunits_coords:main
gff_toolkit = mgnify_pipelines_toolkit.analysis.assembly.gff_toolkit:main
krona_txt_from_cat_classification = mgnify_pipelines_toolkit.analysis.assembly.krona_txt_from_cat_classification:main
library_strategy_check = mgnify_pipelines_toolkit.analysis.shared.library_strategy_check:main
make_asv_count_table = mgnify_pipelines_toolkit.analysis.amplicon.make_asv_count_table:main
mapseq2biom = mgnify_pipelines_toolkit.analysis.shared.mapseq2biom:main
mapseq_to_asv_table = mgnify_pipelines_toolkit.analysis.amplicon.mapseq_to_asv_table:main
markergene_study_summary = mgnify_pipelines_toolkit.analysis.shared.markergene_study_summary:main
permute_primers = mgnify_pipelines_toolkit.analysis.amplicon.permute_primers:main
primer_val_classification = mgnify_pipelines_toolkit.analysis.amplicon.primer_val_classification:main
process_dbcan_cazys = mgnify_pipelines_toolkit.analysis.assembly.process_dbcan_result_cazys:main
process_dbcan_clusters = mgnify_pipelines_toolkit.analysis.assembly.process_dbcan_result_clusters:main
rawreads_study_summary_generator = mgnify_pipelines_toolkit.analysis.rawreads.study_summary_generator:cli
remove_ambiguous_reads = mgnify_pipelines_toolkit.analysis.amplicon.remove_ambiguous_reads:main
rev_comp_se_primers = mgnify_pipelines_toolkit.analysis.amplicon.rev_comp_se_primers:main
summarise_antismash_bgcs = mgnify_pipelines_toolkit.analysis.assembly.summarise_antismash_bgcs:main
summarise_goslims = mgnify_pipelines_toolkit.analysis.assembly.summarise_goslims:main
summarise_sanntis_bgcs = mgnify_pipelines_toolkit.analysis.assembly.summarise_sanntis_bgcs:main
webin_cli_handler = mgnify_pipelines_toolkit.ena.webin_cli_handler:main
