Acid Genomics Base Functions

Documentation for package ‘acidbase’ version 0.1.6

appendToBody	Append values to function body
bapply	Boolean apply
basenameSansExt	Base name without the file extension
callAndName	Call a function and give the result names
compress	Compress or decompress a file
compressExtPattern	File extension pattern matching
decompress	Compress or decompress a file
dots	Extract dots from function
extPattern	File extension pattern matching
fileDepth	File depth
fileExt	File extension
formalsList	List of global formals
getNameInParent	Get the name of a variable defined in the parent frame
initDir	Initialize directory
matchArgsToDoCall	Match arguments to 'do.call'
methodDefinition	Access the data inside an S4 method definition
methodFormals	Access the data inside an S4 method definition
methodFunction	Access the data inside an S4 method definition
params	Shared parameter documentation
parseArgs	Parse command line argument flags
pasteURL	Concatenate strings to form a URL
positionalArgs	Positional command line arguments
printString	Print string
realpath	Express file paths in canonical form
requireNamespaces	Require package namespaces
safeDeparse	Expression deparsing
shorten	Shorten (truncate) input to a specified width
standardizeCall	Standardize call
toNames	Sanitize vector input to names