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| aggregateCellsToSamples | Aggregate cells to samples |
| aggregateCellsToSamples-method | Aggregate cells to samples |
| aggregateCols | Aggregate columns |
| aggregateCols-method | Aggregate columns |
| cell2sample | Cell-to-sample mappings |
| cell2sample-method | Cell-to-sample mappings |
| combine | Combine multiple objects |
| combine-method | Combine multiple objects |
| convertSampleIDsToNames | Convert sample identifiers to names |
| convertSampleIDsToNames-method | Convert sample identifiers to names |
| export | Export |
| export-method | Export |
| filterCells | Filter cells |
| filterCells-method | Filter cells |
| geometricMean | Geometric mean |
| geometricMean-method | Geometric mean |
| makeSingleCellExperiment | Make a SingleCellExperiment object |
| mapCellsToSamples | Map cells to samples |
| melt | Melt columns into key-value pairs |
| melt-method | Melt columns into key-value pairs |
| metrics | Quality control metrics |
| metrics-method | Quality control metrics |
| metricsPerSample | Quality control metrics |
| metricsPerSample-method | Quality control metrics |
| sampleData | Sample data |
| sampleData-method | Sample data |
| sampleData<- | Sample data |
| sampleData<--method | Sample data |
| selectSamples | Select samples |
| selectSamples-method | Select samples |
| subsetPerSample | Subset per sample |
| subsetPerSample-method | Subset per sample |
| topCellsPerSample | Top cells per sample |
| topCellsPerSample-method | Top cells per sample |
| zerosVsDepth | Percentage of zeros vs. library depth |
| zerosVsDepth-method | Percentage of zeros vs. library depth |