Automated cell type classification

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Documentation for package ‘garnett’ version 0.2.8

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garnett-package garnett
cell_rules cell_rules class
cell_rules-class cell_rules class
check_markers Check marker file
classify_cells Classify cells from trained garnett_classifier
garnett garnett
garnett_classifier The garnett_classifier class
garnett_classifier-class The garnett_classifier class
gene_rule-class gene_rule class
get_classifier_references Retrieve marker references from garnett_classifier
get_feature_genes Extract feature genes
Parser Parsing the Garnett marker file
plot_markers Plot marker metrics
test_cds Small test CDS object
test_classifier Small test garnett_classifier object
train_cell_classifier Train a cell type classifier