Pipette Biological Data In and Out of R

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Documentation for package ‘pipette’ version 0.11.1

• DESCRIPTION file.
• Package NEWS.

Help Pages

as.data.frame	Coerce object to data.frame
as.data.frame-method	Coerce object to data.frame
as.DataFrame	Coerce object to S4 DataFrame
as.DataFrame-method	Coerce object to S4 DataFrame
assignAndSaveData	Assign and save data
atomize	Atomize
atomize-method	Atomize
cacheURL	Download and cache a file using BiocFileCache
checksums	Generate checksum from file
decode	Decode data that uses run-length encoding
decode-method	Decode data that uses run-length encoding
droplevels2	Drop factor levels
droplevels2-method	Drop factor levels
encode	Encode using run-length encoding
encode-method	Encode using run-length encoding
export	Export
export-method	Export
factorize	Factorize
factorize-method	Factorize
getJSON	Get JSON from an API
getURLDirList	Get remote URL directory listing
import	Import
import-method	Import
loadData	Load data
loadDataAsName	Load data as name
loadRemoteData	Load remote data
matchRownameColumn	Match row name column
matchRownameColumn-method	Match row name column
md5	Generate checksum from file
metadata2	Metadata
metadata2-method	Metadata
metadata2<-	Metadata
metadata2<--method	Metadata
naStrings	NA strings
PipetteBAMFile-class	File extension classes
PipetteBcbioCountsFile-class	File extension classes
PipetteBCFFile-class	File extension classes
PipetteCRAMFile-class	File extension classes
PipetteCSVFile-class	File extension classes
PipetteDelimFile-class	File extension classes
PipetteExcelFile-class	File extension classes
PipetteFASTAFile-class	File extension classes
PipetteFASTQFile-class	File extension classes
PipetteFile-class	File extension classes
PipetteGCTFile-class	File extension classes
PipetteGMTFile-class	File extension classes
PipetteGMXFile-class	File extension classes
PipetteGRPFile-class	File extension classes
PipetteJSONFile-class	File extension classes
PipetteLinesFile-class	File extension classes
PipetteMAFFile-class	File extension classes
PipetteMTXFile-class	File extension classes
PipetteOBOFile-class	File extension classes
PipettePZFXFile-class	File extension classes
PipetteRDataFile-class	File extension classes
PipetteRDSFile-class	File extension classes
PipetteRioFile-class	File extension classes
PipetteRtracklayerFile-class	File extension classes
PipetteSAMFile-class	File extension classes
PipetteTableFile-class	File extension classes
PipetteTSVFile-class	File extension classes
PipetteVCFFile-class	File extension classes
PipetteYAMLFile-class	File extension classes
removeNA	Remove rows and columns containing only NA values
removeNA-method	Remove rows and columns containing only NA values
sanitizeNA	Sanitize NA values
sanitizeNA-method	Sanitize NA values
sanitizePercent	Sanitize percentage
sanitizePercent-method	Sanitize percentage
saveData	Save data
sha256	Generate checksum from file
transmit	Transmit files from a remote FTP server