Pipette Biological Data In and Out of R

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Documentation for package ‘pipette’ version 0.15.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

as.data.frame	Coerce object to data.frame
as.data.frame-method	Coerce object to data.frame
as.DataFrame	Coerce object to S4 DataFrame
as.DataFrame-method	Coerce object to S4 DataFrame
assignAndSaveData	Assign and save data
atomize	Atomize
atomize-method	Atomize
cacheUrl	Download and cache a file
checksums	Generate checksum from file
decode	Decode data that uses run-length encoding
decode-method	Decode data that uses run-length encoding
droplevels2	Drop factor levels
droplevels2-method	Drop factor levels
encode	Encode using run-length encoding
encode-method	Encode using run-length encoding
export	Export data from R
export-method	Export data from R
factorize	Factorize
factorize-method	Factorize
fillLines	Fill delimited lines with NA values
getJson	Get JSON from an API
getUrlDirList	Get remote URL directory listing
import	Import data into R
import-method	Import data into R
loadData	Load data
loadDataAsName	Load data as name
loadRemoteData	Load remote data
matchRownameColumn	Match row name column
matchRownameColumn-method	Match row name column
md5	Generate checksum from file
metadata2	Metadata
metadata2-method	Metadata
metadata2<-	Metadata
metadata2<--method	Metadata
naStrings	NA strings
PipetteBamFile-class	File extension classes
PipetteBcbioCountsFile-class	File extension classes
PipetteBcfFile-class	File extension classes
PipetteCramFile-class	File extension classes
PipetteCsvFile-class	File extension classes
PipetteDelimFile-class	File extension classes
PipetteExcelFile-class	File extension classes
PipetteFastaFile-class	File extension classes
PipetteFastqFile-class	File extension classes
PipetteFile-class	File extension classes
PipetteGctFile-class	File extension classes
PipetteGmtFile-class	File extension classes
PipetteGmxFile-class	File extension classes
PipetteGrpFile-class	File extension classes
PipetteJsonFile-class	File extension classes
PipetteLinesFile-class	File extension classes
PipetteMafFile-class	File extension classes
PipetteMtxFile-class	File extension classes
PipetteOboFile-class	File extension classes
PipettePzfxFile-class	File extension classes
PipetteRDataFile-class	File extension classes
PipetteRdsFile-class	File extension classes
PipetteRioFile-class	File extension classes
PipetteRtracklayerFile-class	File extension classes
PipetteSamFile-class	File extension classes
PipetteTableFile-class	File extension classes
PipetteTsvFile-class	File extension classes
PipetteVcfFile-class	File extension classes
PipetteYamlFile-class	File extension classes
removeNa	Remove rows and columns containing only NA values
removeNa-method	Remove rows and columns containing only NA values
sanitizeNa	Sanitize NA values
sanitizeNa-method	Sanitize NA values
sanitizePercent	Sanitize percentage
sanitizePercent-method	Sanitize percentage
saveData	Save data
sha256	Generate checksum from file
transmit	Transmit files from a remote FTP server
unfactorize	Unfactorize
unfactorize-method	Unfactorize