Tabulate, Analyse and Visualise Admixture Proportions

Documentation for package ‘pophelper’ version 2.3.1

alignK	Align clusters
analyseQ	Analyse STRUCTURE, TESS, BAPS or BASIC text runs. Wrapper around several smaller functions.
analyzeQ	Analyse STRUCTURE, TESS, BAPS or BASIC text runs. Wrapper around several smaller functions.
as.qlist	Convert a qlist or qlist-like list to a valid qlist.
clumppExport	Generate CLUMPP output from a qlist
collectClumppOutput	Collect CLUMPP output files from multiple folders
collectRunsTess	Collect TESS run results from multiple folders
distructColors	Vector of 90 Distruct colours
distructColours	Vector of 90 Distruct colours
distructExport	Generate files for DISTRUCT.
evannoMethodStructure	Perform the Evanno method for STRUCTURE runs.
is.qlist	Verify if a qlist is formatted correctly.
joinQ	Combine two or more qlist objects into one
mergeQ	Merge replicate runs of the same K
plotQ	Generate barplots from qlists.
plotQMultiline	Plot a qlist as individual-level multiline barplot
readQ	Convert run files (q-matrices) to qlist.
readQBaps	Convert BAPS cluster files to qlist.
readQBasic	Convert delimited text files to qlist.
readQClumpp	Convert CLUMPP format numeric text files to qlist.
readQStructure	Convert STRUCTURE run files to qlist.
readQTess	Convert TESS cluster files to qlist.
readQTess3	Convert TESS3 R object to pophelper qlist.
sortQ	Sort runs in a qlist based on an attribute
splitQ	Split a qlist into sublists by attribute
summariseQ	Summarise a tabulated dataframe
summarizeQ	Summarise a tabulated dataframe
tabulateQ	Tabulate runs from a qlist
verifyGrplab	Verify a grplab dataframe