{.section common}
{.end}
{project_name}
{.section run_section}
Post-processing was started {run_date}
{.section suite_version} {suite_version}
{.end} {.section program_versions} {program_versions}
{.or} {.end} {.or} {.end}
{.section suite_version} {suite_version}
{.end} {.section program_versions} {program_versions}
{.or} {.end} {.or} {.end}
{.section basecalls}
{contents}
{.end} {.section raw_fastqc} {contents}
{.end} {.section fastqc} {contents} {.or} {.end}
{.end} {.section raw_fastqc} {contents}
{.end} {.section fastqc} {contents} {.or} {.end}
{.section targ_qc}
{.end} {.section targ_qc} {contents} {.or} {.end}
Alignment and Capture
{.or} {.end} {.section pre_targ_qc} {contents}{.end} {.section targ_qc} {contents} {.or} {.end}
{.section gene_counts}
{.or} {.end} {.section gene_tpm} {contents} /  {.or} {.end} {.section isoform_tpm} {contents} {.or} {.end}
Gene expression
{contents} /  {.or} {.end} {.section exon_counts} {contents}{.or} {.end} {.section gene_tpm} {contents} /  {.or} {.end} {.section isoform_tpm} {contents} {.or} {.end}
{.section qc_report}
{.or} {.end}
Summary
{contents}{.or} {.end}
{.section mutations}
{.or} {.end} {.section mutations_for_paired_samples} {contents} {.or} {.end} {.section oncoprints}
{oncoprints_link}
{.end}
Variants
{contents} {.or} {.end} {.section mutations_for_single_samples} {contents}{.or} {.end} {.section mutations_for_paired_samples} {contents} {.or} {.end} {.section oncoprints}
{oncoprints_link}
{.end}