Extra Base Functions for Bioconductor
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Documentation for package ‘xbioc’ version 0.1.19
Help Pages
| annotation-tools | Annotation Tools |
| annotation-utils | Handling Object Annotations |
| assayDataMelt | Melting Assay Data |
| available_tx_db | Lists Available Transcript Annotation Packages |
| bimap_lookup | Looking Up Keys in Identifier Maps |
| bioc-generic | Extracting Feature Names |
| bioc-utils | Generic Bioconductor Utilities |
| biocann_mapname | Annotation Tools |
| biocann_object | Retrieving Bioconductor Annotation Maps |
| biocann_orgdb | Bioconductor Organism Data and Packages |
| biocann_orgdb_pkgname | Bioconductor Organism Data and Packages |
| biocann_pkgname | Annotation Tools |
| biocann_pkgobject | Annotation Tools |
| cbind.ExpressionSet | Combining Expression Matrices |
| cbind_ExpressionSet | Combining ExpressionSet Objects |
| checkSYMBOLS | Checks Gene Symbol Validity |
| compareFeatures | Compare Features Sets |
| compareFeatures-method | Compare Features Sets |
| convertAlias | Converts Gene Alias to Official Gene Symbols |
| df_append | Appending Columns to Data Frames |
| digestN | Computing a Short Digest String |
| ensembldb_latest | Lists Available Transcript Annotation Packages |
| exp-method | Numeric Computations on ExpressionSet objects |
| expb | Numeric Computations on ExpressionSet objects |
| expb-method | Numeric Computations on ExpressionSet objects |
| exprs-method | Extracting Feature Names |
| exprs<--method | Extracting Feature Names |
| featureIsControl | Extracting Control Probes |
| featureNames-method | Extracting Feature Names |
| featureNames<--method | Extracting Feature Names |
| flow_reference<- | Change Reference Populations in Flowcytometry Data |
| geneInfo | Simple Feature Annotation |
| getAnnotation | Handling Object Annotations |
| getAnnotation.default | Handling Object Annotations |
| getAnnotation.list | Handling Object Annotations |
| hasAnnotation | Handling Object Annotations |
| has_logscale_outliers | Detect Log-transformed Data |
| idtype | Identifying Gene or Probe ID Type |
| idtype-method | Identifying Gene or Probe ID Type |
| intersect | Enhanced Subsetting for Matrix-like Data |
| intersect-method | Enhanced Subsetting for Matrix-like Data |
| is.anndb | Annotation Tools |
| is.annpkg | Annotation Tools |
| is.idtype | 'is.idtype' tells if a given character vector contains valid types. |
| is.orgpkg | Annotation Tools |
| is.probeid | 'is.idtype' tells if a given character vector contains valid types. |
| is.probetype | 'is.idtype' tells if a given character vector contains valid types. |
| isExpressionSet | Generic Bioconductor Utilities |
| isMatrixData | Generic Bioconductor Utilities |
| is_Affymetrix | Testing Identifier Types |
| is_Agilent | Testing Identifier Types |
| is_Illumina | Testing Identifier Types |
| is_logscale | Detect Log-transformed Data |
| log-method | Numeric Computations on ExpressionSet objects |
| log_transform | Detect Log-transformed Data |
| melt.ExpressionSet | Melt an ExpressionSet for Use with ggplot |
| NAmap | Initialising a Mapping List |
| nuIDdecode | Convert nuID to Nucleotide Sequence |
| pVar | Retrieve Phenotypic Variable from Data |
| pVar-method | Retrieve Phenotypic Variable from Data |
| quantile.ExpressionSet | Numeric Computations on ExpressionSet objects |
| range-method | Numeric Computations on ExpressionSet objects |
| rbind_ExpressionSet | Combining ExpressionSet Objects |
| read.fcs | Read All FCS Files in a Directory |
| samFDR | Compute Permutation-based FDR as in SAM |
| sampleNames,matrix,ANY | Extracting Feature Names |
| sampleNames-method | Extracting Feature Names |
| sampleNames<--method | Extracting Feature Names |
| setAnnotation | Handling Object Annotations |
| setAnnotation.default | Handling Object Annotations |
| setAnnotation.list | Handling Object Annotations |