{% if menu %}
{% include "chlamdb/menu.html" %}
{% endif %}
{% if not valid_id %}
{% else %}
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{% if sequence_type == "CDS" %}
{% endif %}
{% if sequence_type == "CDS" %}
{% endif %}
{% if pfam_def|length > 0 %}
{% for val in pfam_def %}
{% endif %}
{% for result_table in result_tables%}
{% if result_table|keyvalue:"table_data"|length > 0 %}
{% include "chlamdb/result_table.html" with results=result_table %}
{% endif %}
{% endfor %}
{% endif %}
{% include "chlamdb/homologs.html" %}
Distribution of the homologs in the orthogroup {{og_id|safe}}
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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).
Phylogeny of the RefSeq best hits of {{og_id|safe}}
{% include "chlamdb/result_table.html" with results=swissprot %}
- Number of RefSeq hits: {{n_refseq_homologs}}
| {{entry}} | {% endfor %}
|---|
| {{entry|safe}} | {% endfor %}
General
| Source | {{organism|safe}} | |
|---|---|---|
| Locus tag | {{locus_tag}} | |
| Feature type | {{feature_type}} | |
| Gene | {{gene}} | |
| Product | {{prot}} | |
| Location |
{% for pos in gene_pos %}
{{pos.0}} - {{pos.1}} (strand: {{pos.2}})
{% if gene_pos|length > 1 %}
{% endif %} {% endfor %} |
|
| Length | {% if sequence_type == "CDS" %}{{nucl_length}} (nucleotides) / {{length}} (amino acids) | {% else %}{{nucl_length}} (nucleotides) | {% endif %}
| In genomic island |
{% if genomic_islands|length > 0 %}
{% for gi in genomic_islands %}
{{gi|safe}}
{% if genomic_islands|length > 1 %}
{% endif %} {% endfor %} {% else %} - {% endif %} |
Contig
| Accession | {{contig_accession}} |
|---|---|
| Length | {{contig_size}} nucleotides |
| Topology | {{contig_topology}} |
| Plasmid | {{contig_is_plasmid}} |
Genomic region
Domains
| {{val.0|safe}} | {{val.1}} |
|---|
{{result_table|keyvalue:"title"}}
{% if sequence_type == "CDS" %}
{% endif %}
Protein Sequence
{{translation}}
Flanking regions ( +/- flanking 50bp)
{{ seq|safe }}