Package: cobrar
Title: Constraint-Based Metabolic Network Analysis in R
Version: 0.2.3
Authors@R: 
    c(person("Silvio", "Waschina", email = "s.waschina@nutrinf.uni-kiel.de", role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6290-3593")),
      person("Johannes", "Zimmermann", role = c("aut"),
             comment = c(ORCID = "0000-0002-5041-1954")),
      person("Sina", "Froitzheim", role = c("aut"),
             comment = c(ORCID = "0009-0005-0537-4970"))
      )
URL: https://github.com/Waschina/cobrar,
        https://waschina.github.io/cobrar/
Description: Structures and functions to perform constraint-based metabolic network analysis, e.g., the prediction of metabolic fluxes using Flux Balance Analysis (FBA).
Depends: Matrix
License: GPL (>= 3)
SystemRequirements: libSBML (>= 5.16), GLPK (>= 4.65)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
LinkingTo: Rcpp, RcppArmadillo
Imports: Rcpp, methods, tools, utils, jsonlite
Suggests: knitr, rmarkdown, ggplot2, testthat (>= 3.0.0), covr, lintr
Config/testthat/edition: 3
VignetteBuilder: knitr
Collate: 'ConstraintsClass.R' 'FluxPredictionClass.R'
        'LPproblemClass.R' 'LPproblem_glpkClass.R' 'ModelOrgClass.R'
        'ModelCommClass.R' 'RcppExports.R' 'annotation.R' 'checkId.R'
        'chemoinformatics.R' 'cobrar.R' 'deadEndMetabolites.R' 'fba.R'
        'findExchReact.R' 'fixBMRatios.R' 'fluxBMCoupling.R'
        'fluxdist_analysis.R' 'frog.R' 'fva.R' 'geneDel.R'
        'guessBMReaction.R' 'io.R' 'joinModels.R'
        'model_modifications.R' 'parseBoolean.R' 'pfba.R'
        'pfba_heuristic.R' 'printers.R'
Author: Silvio Waschina [aut, cre] (<https://orcid.org/0000-0002-6290-3593>),
  Johannes Zimmermann [aut] (<https://orcid.org/0000-0002-5041-1954>),
  Sina Froitzheim [aut] (<https://orcid.org/0009-0005-0537-4970>)
Maintainer: Silvio Waschina <s.waschina@nutrinf.uni-kiel.de>
Built: R 4.4.3; x86_64-apple-darwin13.4.0; 2026-01-07 13:34:38 UTC; unix
