addCols	addCols-methods
addCols,LPproblem_glpk	addCols-methods
addCols,LPproblem_glpk-method	addCols-methods
addCompartment	addCompartment
addConstraint	addConstraint-methods
addConstraint,ModelOrg,character,numeric,character	addConstraint-methods
addConstraint,ModelOrg,character,numeric,character-method	addConstraint-methods
addConstraint,ModelOrg,list,list,character	addConstraint-methods
addConstraint,ModelOrg,list,list,character-method	addConstraint-methods
addGene	addGene
addMetabolite	addMetabolite
addReact	addReact
addRows	addRows-methods
addRows,LPproblem_glpk	addRows-methods
addRows,LPproblem_glpk-method	addRows-methods
addSingleConstraint	addSingleConstraint-methods
addSingleConstraint,LPproblem_glpk	addSingleConstraint-methods
addSingleConstraint,LPproblem_glpk-method	addSingleConstraint-methods
addSubsystem	addSubsystem
changeBounds	changeBounds
changeObjFunc	changeObjFunc
checkCompartmentId	checkCompartmentId
checkGeneId	checkGeneId
checkMetId	checkMetId
checkReactId	checkReactId
checkSubsystemId	checkSubsystemId
COBRAR_SETTINGS	COBRAR_SETTINGS
comp_num	comp_num-methods
comp_num,ModelOrg	comp_num-methods
comp_num,ModelOrg-method	comp_num-methods
comp_pos	comp_pos-methods
comp_pos,ModelOrg,character	comp_pos-methods
comp_pos,ModelOrg,character-method	comp_pos-methods
comp_pos,ModelOrg,logical	comp_pos-methods
comp_pos,ModelOrg,logical-method	comp_pos-methods
comp_pos,ModelOrg,missing	comp_pos-methods
comp_pos,ModelOrg,missing-method	comp_pos-methods
comp_pos,ModelOrg,numeric	comp_pos-methods
comp_pos,ModelOrg,numeric-method	comp_pos-methods
Constraints	Constraints-class
Constraints-class	Constraints-class
constraint_num	constraint_num-methods
constraint_num,ModelOrg	constraint_num-methods
constraint_num,ModelOrg-method	constraint_num-methods
countElements	countElements
deadEndMetabolites	deadEndMetabolites
deleteLP	deleteLP-methods
deleteLP,LPproblem_glpk	deleteLP-methods
deleteLP,LPproblem_glpk-method	deleteLP-methods
elements	elements
fba	fba
findExchReact	findExchReact-methods
findExchReact,ModelComm	findExchReact-methods
findExchReact,ModelComm-method	findExchReact-methods
findExchReact,ModelOrg	findExchReact-methods
findExchReact,ModelOrg-method	findExchReact-methods
fixBMRatios	fixBMRatios
fluxBMCoupling	fluxBMCoupling
FluxPrediction	FluxPrediction-class
FluxPrediction-class	FluxPrediction-class
frog	frog-methods
frog,character	frog-methods
frog,character-method	frog-methods
frog,ModelOrg	frog-methods
frog,ModelOrg-method	frog-methods
fva	fva
fvaJob	fvaJob-methods
fvaJob,LPproblem_glpk	fvaJob-methods
fvaJob,LPproblem_glpk-method	fvaJob-methods
geneDel	geneDel
gene_num	gene_num-methods
gene_num,ModelOrg	gene_num-methods
gene_num,ModelOrg-method	gene_num-methods
gene_pos	gene_pos-methods
gene_pos,ModelOrg,character	gene_pos-methods
gene_pos,ModelOrg,character-method	gene_pos-methods
gene_pos,ModelOrg,missing	gene_pos-methods
gene_pos,ModelOrg,missing-method	gene_pos-methods
gene_pos,ModelOrg,numeric	gene_pos-methods
gene_pos,ModelOrg,numeric-method	gene_pos-methods
getColsPrimal	getColsPrimal-methods
getColsPrimal,LPproblem_glpk	getColsPrimal-methods
getColsPrimal,LPproblem_glpk-method	getColsPrimal-methods
getExchanges	getExchanges
getObjValue	getObjValue-methods
getObjValue,LPproblem_glpk	getObjValue-methods
getObjValue,LPproblem_glpk-method	getObjValue-methods
getRedCosts	getRedCosts-methods
getRedCosts,LPproblem_glpk	getRedCosts-methods
getRedCosts,LPproblem_glpk-method	getRedCosts-methods
getSolStat	getSolStat-methods
getSolStat,LPproblem_glpk	getSolStat-methods
getSolStat,LPproblem_glpk-method	getSolStat-methods
guessBMReaction	guessBMReaction-methods
guessBMReaction,ModelComm	guessBMReaction-methods
guessBMReaction,ModelComm-method	guessBMReaction-methods
guessBMReaction,ModelOrg	guessBMReaction-methods
guessBMReaction,ModelOrg-method	guessBMReaction-methods
joinModels	joinModels
loadLPprob	loadLPprob-methods
loadLPprob,LPproblem_glpk	loadLPprob-methods
loadLPprob,LPproblem_glpk-method	loadLPprob-methods
loadMatrix	loadMatrix-methods
loadMatrix,LPproblem_glpk	loadMatrix-methods
loadMatrix,LPproblem_glpk-method	loadMatrix-methods
LPproblem	LPproblem-class
LPproblem-class	LPproblem-class
LPproblem_glpk-class	LPproblem_glpk-class
mass	mass
met_num	met_num-methods
met_num,ModelOrg	met_num-methods
met_num,ModelOrg-method	met_num-methods
met_pos	met_pos-methods
met_pos,ModelOrg,character	met_pos-methods
met_pos,ModelOrg,character-method	met_pos-methods
met_pos,ModelOrg,missing	met_pos-methods
met_pos,ModelOrg,missing-method	met_pos-methods
met_pos,ModelOrg,numeric	met_pos-methods
met_pos,ModelOrg,numeric-method	met_pos-methods
ModelComm	ModelComm-class
ModelComm-class	ModelComm-class
ModelOrg	ModelOrg-class
ModelOrg-class	ModelOrg-class
pfba	pfba
pfbaHeuristic	pfbaHeuristic
printConstraint	printConstraint
printReaction	printReaction
react_num	react_num-methods
react_num,ModelOrg	react_num-methods
react_num,ModelOrg-method	react_num-methods
react_pos	react_pos-methods
react_pos,ModelOrg,character	react_pos-methods
react_pos,ModelOrg,character-method	react_pos-methods
react_pos,ModelOrg,missing	react_pos-methods
react_pos,ModelOrg,missing-method	react_pos-methods
react_pos,ModelOrg,numeric	react_pos-methods
react_pos,ModelOrg,numeric-method	react_pos-methods
readSBMLmod	readSBMLmod
readSybilmod	readSybilmod
rmCompartment	rmCompartment
rmConstraint	rmConstraint
rmGene	rmGene
rmMetabolite	rmMetabolite
rmReact	rmReact
rmSubsystem	rmSubsystem
setColsBndsObjCoefs	setColsBndsObjCoefs-methods
setColsBndsObjCoefs,LPproblem_glpk	setColsBndsObjCoefs-methods
setColsBndsObjCoefs,LPproblem_glpk-method	setColsBndsObjCoefs-methods
setColsKind	setColsKind-methods
setColsKind,LPproblem_glpk	setColsKind-methods
setColsKind,LPproblem_glpk-method	setColsKind-methods
setObjDir	setObjDir
setObjDirection	setObjDirection-methods
setObjDirection,LPproblem_glpk	setObjDirection-methods
setObjDirection,LPproblem_glpk-method	setObjDirection-methods
setRowsBnds	setRowsBnds-methods
setRowsBnds,LPproblem_glpk	setRowsBnds-methods
setRowsBnds,LPproblem_glpk-method	setRowsBnds-methods
show,FluxPrediction-method	show-FluxPrediction-method
show,ModelOrg-method	show-ModelOrg-method
solveLp	solveLp-methods
solveLp,LPproblem_glpk	solveLp-methods
solveLp,LPproblem_glpk-method	solveLp-methods
subsys_num	subsys_num-methods
subsys_num,ModelOrg	subsys_num-methods
subsys_num,ModelOrg-method	subsys_num-methods
subsys_pos	subsys_pos-methods
subsys_pos,ModelOrg,character	subsys_pos-methods
subsys_pos,ModelOrg,character-method	subsys_pos-methods
subsys_pos,ModelOrg,logical	subsys_pos-methods
subsys_pos,ModelOrg,logical-method	subsys_pos-methods
subsys_pos,ModelOrg,missing	subsys_pos-methods
subsys_pos,ModelOrg,missing-method	subsys_pos-methods
subsys_pos,ModelOrg,numeric	subsys_pos-methods
subsys_pos,ModelOrg,numeric-method	subsys_pos-methods
writeSBMLmod	writeSBMLmod
