RNAlib-2.2.10
Free Energy Evaluation for given Sequence / Structure Pairs

This module contains all functions and variables related to energy evaluation of sequence/structure pairs. More...

Files

file  eval.h
 Functions and variables related to energy evaluation of sequence/structure pairs.
 

Functions

int vrna_eval_ext_hp_loop (vrna_fold_compound_t *vc, int i, int j)
 Evaluate free energy of an exterior hairpin loop.
 
int vrna_eval_hp_loop (vrna_fold_compound_t *vc, int i, int j)
 Evaluate free energy of a hairpin loop. More...
 

Detailed Description

This module contains all functions and variables related to energy evaluation of sequence/structure pairs.

Function Documentation

int vrna_eval_hp_loop ( vrna_fold_compound_t vc,
int  i,
int  j 
)

#include <ViennaRNA/hairpin_loops.h>

Evaluate free energy of a hairpin loop.

Note
This function is polymorphic! The provided vrna_fold_compound_t may be of type VRNA_VC_TYPE_SINGLE or VRNA_VC_TYPE_ALIGNMENT
Parameters
vcThe vrna_fold_compound_t for the particular energy evaluation
i5'-position of the base pair
j3'-position of the base pair
Returns
Free energy of the hairpin loop closed by $ (i,j) $ in deka-kal/mol