- Calculate z-scores based on a dinucleotide model. Current model 
  results in a relatively high rate of false positives due to
  dinucleotide effects.
- The SCI dependends unexpectedly strong on the GC content 
  causing RNAz to be biased towards GC rich alignments. This
  must be fixed in some way. 

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$Id: TODO,v 1.4 2006/10/12 16:40:25 wash Exp $

