microseq-package | Basic Biological Sequence Analysis |
amplicon | Primer matching |
cmalign | Multiple alignment using Infernal |
Fasta | Read and write FASTA files |
gregexpr | Extended 'gregexpr' with substring retrieval |
iupac2regex | Ambiguity symbol conversion |
microseq | Basic Biological Sequence Analysis |
msalign | Multiple alignment |
msaTrim | Trimming multiple sequence alignments |
muscle | Multiple alignment using MUSCLE |
plot.Fasta | Plotting and summary of 'Fasta' objects |
plot.Fastq | Plotting and summary of 'Fastq' objects |
readFasta | Read and write FASTA files |
readFastq | Read and write FASTQ files |
regex2iupac | Ambiguity symbol conversion |
reverseComplement | Reverse-complementation of DNA |
summary.Fasta | Plotting and summary of 'Fasta' objects |
summary.Fastq | Plotting and summary of 'Fastq' objects |
translate | Translation according to the standard genetic code |
uipac2regex | Ambiguity symbol conversion |
writeFasta | Read and write FASTA files |
writeFastq | Read and write FASTQ files |