AlphaSimR-package	AlphaSimR
aa	aa
AlphaSimR	AlphaSimR
bv	bv
c,HybridPop-method	HybridPop-class
c,MapPop-method	MapPop-class
c,Pop-method	Pop-class
c,RawPop-method	RawPop-class
calcGCA	calcGCA
dd	dd
ebv	ebv
editGenome	editGenome
editGenomeTopQtl	editGenomeTopQtl
fastRRBLUP	fastRRBLUP
GCAsol-class	GCAsol-class
genicVarA	genicVarA
genicVarAA	genicVarAA
genicVarD	genicVarD
genicVarG	genicVarG
genParam	genParam
getQtlMap	getQtlMap
getSnpMap	getSnpMap
gv	gv
hybridCross	hybridCross
HybridPop-class	HybridPop-class
LociMap-class	LociMap-class
makeCross	makeCross
makeCross2	makeCross2
makeDH	makeDH
MapPop-class	MapPop-class
meanG	meanG
meanP	meanP
mergePops	mergePops
newMapPop	newMapPop
newPop	newPop
nInd	nInd
pedigreeCross	pedigreeCross
pheno	pheno
Pop-class	Pop-class
popVar	popVar
pullIbdHaplo	pullIbdHaplo
pullMultipleSnpGeno	pullMultipleSnpGeno
pullMultipleSnpHaplo	pullMultipleSnpHaplo
pullQtlGeno	pullQtlGeno
pullQtlHaplo	pullQtlHaplo
pullSegSiteGeno	pullSegSiteGeno
pullSegSiteHaplo	pullSegSiteHaplo
pullSnpGeno	pullSnpGeno
pullSnpHaplo	pullSnpHaplo
quickHaplo	quickHaplo
randCross	randCross
randCross2	randCross2
RawPop-class	RawPop-class
resetPop	resetPop
RRBLUP	RRBLUP
RRBLUP2	RRBLUP2
RRBLUPMemUse	RRBLUPMemUse
RRBLUP_D	RRBLUP_D
RRBLUP_D2	RRBLUP_D2
RRBLUP_GCA	RRBLUP_GCA
RRBLUP_GCA2	RRBLUP_GCA2
RRBLUP_SCA	RRBLUP_SCA
RRDsol-class	RRDsol-class
RRsol-class	RRsol-class
runMacs	runMacs
runMacs2	runMacs2
sampleHaplo	sampleHaplo
SCAsol-class	SCAsol-class
selectCross	selectCross
selectFam	selectFam
selectInd	selectInd
selectOP	selectOP
selectWithinFam	selectWithinFam
self	self
selIndex	selIndex
selInt	selInt
setEBV	setEBV
setPheno	setPheno
setPhenoGCA	setPhenoGCA
SimParam	SimParam
SimParam_addSnpChip	SimParam_addSnpChip
SimParam_addStructuredSnpChips	SimParam_addStructuredSnpChips
SimParam_addTraitA	SimParam_addTraitA
SimParam_addTraitAD	SimParam_addTraitAD
SimParam_addTraitADE	SimParam_addTraitADE
SimParam_addTraitADEG	SimParam_addTraitADEG
SimParam_addTraitADG	SimParam_addTraitADG
SimParam_addTraitAE	SimParam_addTraitAE
SimParam_addTraitAEG	SimParam_addTraitAEG
SimParam_addTraitAG	SimParam_addTraitAG
SimParam_manAddSnpChip	SimParam_manAddSnpChip
SimParam_manAddTrait	SimParam_manAddTrait
SimParam_new	SimParam_new
SimParam_removeFounderPop	SimParam_removeFounderPop
SimParam_removeSnpChip	SimParam_removeSnpChip
SimParam_removeTrait	SimParam_removeTrait
SimParam_rescaleTraits	SimParam_rescaleTraits
SimParam_resetPed	SimParam_resetPed
SimParam_restrSegSites	SimParam_restrSegSites
SimParam_setCorE	SimParam_setCorE
SimParam_setGender	SimParam_setGender
SimParam_setRecRatio	SimParam_setRecRatio
SimParam_setTrackPed	SimParam_setTrackPed
SimParam_setTrackRec	SimParam_setTrackRec
SimParam_setVarE	SimParam_setVarE
SimParam_switchFemaleMap	SimParam_switchFemaleMap
SimParam_switchFounderPop	SimParam_switchFounderPop
SimParam_switchGenMap	SimParam_switchGenMap
SimParam_switchMaleMap	SimParam_switchMaleMap
SimParam_switchSnpChip	SimParam_switchSnpChip
SimParam_switchTrait	SimParam_switchTrait
smithHazel	smithHazel
TraitA-class	TraitA-class
TraitAD-class	TraitAD-class
TraitADE-class	TraitADE-class
TraitADEG-class	TraitADEG-class
TraitADG-class	TraitADG-class
TraitAE-class	TraitAE-class
TraitAEG-class	TraitAEG-class
TraitAG-class	TraitAG-class
usefulness	usefulness
varA	varA
varAA	varAA
varD	varD
varG	varG
varP	varP
writePlink	writePlink
writeRecords	writeRecords
[,HybridPop-method	HybridPop-class
[,MapPop-method	MapPop-class
[,Pop-method	Pop-class
[,RawPop-method	RawPop-class
