lib/R/library/phyclust/CITATION
lib/R/library/phyclust/DESCRIPTION
lib/R/library/phyclust/Documents/00_Readme-ms.txt
lib/R/library/phyclust/Documents/00_Readme-paml_baseml.txt
lib/R/library/phyclust/Documents/00_Readme-phyclust-c.txt
lib/R/library/phyclust/Documents/00_Readme-seq-gen.txt
lib/R/library/phyclust/Documents/ms-Readme.txt
lib/R/library/phyclust/Documents/paml_baseml-Readme.txt
lib/R/library/phyclust/Documents/seq-gen-Readme.txt
lib/R/library/phyclust/Documents/tzeng-Readme.txt
lib/R/library/phyclust/INDEX
lib/R/library/phyclust/Meta/Rd.rds
lib/R/library/phyclust/Meta/data.rds
lib/R/library/phyclust/Meta/demo.rds
lib/R/library/phyclust/Meta/features.rds
lib/R/library/phyclust/Meta/hsearch.rds
lib/R/library/phyclust/Meta/links.rds
lib/R/library/phyclust/Meta/nsInfo.rds
lib/R/library/phyclust/Meta/package.rds
lib/R/library/phyclust/Meta/vignette.rds
lib/R/library/phyclust/NAMESPACE
lib/R/library/phyclust/R/phyclust
lib/R/library/phyclust/R/phyclust.rdb
lib/R/library/phyclust/R/phyclust.rdx
lib/R/library/phyclust/data/Rdata.rdb
lib/R/library/phyclust/data/Rdata.rds
lib/R/library/phyclust/data/Rdata.rdx
lib/R/library/phyclust/data/crohn.phy
lib/R/library/phyclust/data/pony524.phy
lib/R/library/phyclust/data/pony625.fas
lib/R/library/phyclust/demo/em_step.r
lib/R/library/phyclust/demo/ex_trees.r
lib/R/library/phyclust/demo/pony_524.r
lib/R/library/phyclust/demo/simu_ms.r
lib/R/library/phyclust/demo/simu_ms_tbs.r
lib/R/library/phyclust/demo/simu_seqgen_anc.r
lib/R/library/phyclust/demo/simu_seqgen_anc_SNP.r
lib/R/library/phyclust/demo/toy.r
lib/R/library/phyclust/demo/toy_missing.r
lib/R/library/phyclust/demo/toy_paml_baseml.r
lib/R/library/phyclust/demo/tzeng2005.r
lib/R/library/phyclust/doc/index.html
lib/R/library/phyclust/doc/index_doc.html
lib/R/library/phyclust/doc/phyclust-guide.Rnw
lib/R/library/phyclust/doc/phyclust-guide.pdf
lib/R/library/phyclust/help/AnIndex
lib/R/library/phyclust/help/aliases.rds
lib/R/library/phyclust/help/paths.rds
lib/R/library/phyclust/help/phyclust.rdb
lib/R/library/phyclust/help/phyclust.rdx
lib/R/library/phyclust/html/00Index.html
lib/R/library/phyclust/html/R.css
lib/R/library/phyclust/libs/phyclust.so
lib/R/library/phyclust/test/test.r
