# Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data

## Documentation for package ‘SemiCompRisks’ version 3.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

SemiCompRisks-package | Algorithms for fitting parametric and semi-parametric models to semi-competing risks data / univariate survival data.
BayesID | Old functions
BayesID_AFT | The function to implement Bayesian parametric and semi-parametric analyses for semi-competing risks data in the context of accelerated failure time (AFT) models.
BayesID_HReg | The function to implement Bayesian parametric and semi-parametric analyses for semi-competing risks data in the context of hazard regression (HReg) models.
BayesSurv | Old functions
BayesSurv_AFT | The function to implement Bayesian parametric and semi-parametric analyses for univariate survival data in the context of accelerated failure time (AFT) models.
BayesSurv_HReg | The function to implement Bayesian parametric and semi-parametric regression analyses for univariate time-to-event data in the context of hazard regression (HReg) models.
BMT | Data on 137 Bone Marrow Transplant Patients
CIBMTR | Center for International Blood and Bone Marrow Transplant Research (CIBMTR) data
CIBMTR_Params | Estimates for model parameters from semi-competing risks analysis of the CIBMTR data using Weibull illness-death model.
coef.Bayes_AFT | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
coef.Bayes_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
coef.Freq_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
FreqID | Old functions
FreqID_HReg | The function to fit parametric Weibull models for the frequentist anlaysis of semi-competing risks data.
FreqSurv | Old functions
FreqSurv_HReg | The function to fit parametric Weibull models for the frequentist analysis of univariate survival data.
initiate.startValues | Old functions
initiate.startValues_AFT | The function that initiates starting values for a single chain.
initiate.startValues_HReg | The function that initiates starting values for a single chain.
plot.pred.Bayes_AFT | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
plot.pred.Bayes_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
plot.pred.Freq_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
PPD | Function to predict the joint probability involving two event times in Bayesian illness-death models
predict.Bayes_AFT | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
predict.Bayes_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
predict.Freq_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.Bayes_AFT | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.Bayes_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.Freq_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.summ.Bayes_AFT | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.summ.Bayes_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.summ.Freq_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
scrData | A simulated clustered semi-competing risks data set
SemiCompRisks | Algorithms for fitting parametric and semi-parametric models to semi-competing risks data / univariate survival data.
simID | The function that simulates independent/cluster-correlated semi-competing risks data under semi-Markov Weibull/Weibull-MVN models.
simSurv | The function that simulates independent/cluster-correlated right-censored survival data under Weibull/Weibull-Normal model.
summary.Bayes_AFT | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
summary.Bayes_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
summary.Freq_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
survData | A simulated clustered univariate survival data.
vcov.Freq_HReg | Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.